Click here to switch to the map view.

The map label for this gene is 110681162

Identifier: 110681162

GI number: 110681162

Start: 3895329

End: 3896093

Strand: Direct

Name: 110681162

Synonym: RD1_4038

Alternate gene names: NA

Gene position: 3895329-3896093 (Clockwise)

Preceding gene: 110681161

Following gene: 110681168

Centisome position: 94.25

GC content: 58.69

Gene sequence:

>765_bases
ATGAGTAATGTGAACGCCTCTGTCACCGATGAAGAGCTGACCGCATATCTCGATGGTGAATTGCCACCTGAAAAACATGC
TGCCGTTGAAGCCGCTTTGCGAGACAACCCATCGGTACAAGAGCGGCTTGAGGGGCTGAGGCTCCCCGACGGGTTGCTTG
GGCAGGCTTTTGATCTGGACGCACTTGGTGGACCGGCGATGCCGGCGGCATTGCACGAAAAGATTAAGTCCACCGCCGCG
CCCTCATCGGCAAACACCAACAAGGCCCCACGCATTATCTGGCCCGCAACACTGGCCGCATCTTTCGCGCTGGGGATGCT
GGTGATGAGCACGCTGCGCCCTGGCCCCGATGCGAACTGGGTGGATATAGTGGCCTCTTATCAGGCGCTTTACGTGACCG
AGACTTTGGCGGGTGCGCCTCAATCGCGCGAGATGACGTACAGCGTTCTGAAGCGGGCGCAGGACGAGTTCGGCGTTGAT
CTTGAGGGCGTGTTGGAGATTGAGGGTCTGACCTTCAAGCGCGCACAAATGCTCTCGCTTGACGGCGCACCGTTGATCCA
GATGGCCTATCTGGATGCGCAGGGTCAGCCTTTTGCTTTTTGCCTGACCCCTCAGAAGGCGGATGACCGCGGTAATCAAA
CCCGCATGTCTTTCGATCTGGCCACGTCCAGCTGGGTGGAAGACGGCATCGGCTATGTTCTTGTGGGGGGACAGGATGAT
GCCCTGACCCGTGCGATAGCCACCCGGTTTCGTCGTGCAATCTGA

Upstream 100 bases:

>100_bases
CGGCGGAGATGCTCGACATTCCGATTGGTACGGTCATGAGCCGACTTGCCGGTGCACGAAAGACAATTGTAGCCAGAACA
GCCGCTCAGGAGCCTATAGG

Downstream 100 bases:

>100_bases
TCGCGGCCTTTTGCCTTGAGGACCGGGCGCCAGTCACATTTTGCTGTTTTTTCAAAACAGGTTCGCAGCCTGACTGAATT
GCATCAGATGTGCTGTCATG

Product: hypothetical protein

Products: NA

Alternate protein names: Transmembrane Transcriptional Regulator

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MSNVNASVTDEELTAYLDGELPPEKHAAVEAALRDNPSVQERLEGLRLPDGLLGQAFDLDALGGPAMPAALHEKIKSTAA
PSSANTNKAPRIIWPATLAASFALGMLVMSTLRPGPDANWVDIVASYQALYVTETLAGAPQSREMTYSVLKRAQDEFGVD
LEGVLEIEGLTFKRAQMLSLDGAPLIQMAYLDAQGQPFAFCLTPQKADDRGNQTRMSFDLATSSWVEDGIGYVLVGGQDD
ALTRAIATRFRRAI

Sequences:

>Translated_254_residues
MSNVNASVTDEELTAYLDGELPPEKHAAVEAALRDNPSVQERLEGLRLPDGLLGQAFDLDALGGPAMPAALHEKIKSTAA
PSSANTNKAPRIIWPATLAASFALGMLVMSTLRPGPDANWVDIVASYQALYVTETLAGAPQSREMTYSVLKRAQDEFGVD
LEGVLEIEGLTFKRAQMLSLDGAPLIQMAYLDAQGQPFAFCLTPQKADDRGNQTRMSFDLATSSWVEDGIGYVLVGGQDD
ALTRAIATRFRRAI
>Mature_253_residues
SNVNASVTDEELTAYLDGELPPEKHAAVEAALRDNPSVQERLEGLRLPDGLLGQAFDLDALGGPAMPAALHEKIKSTAAP
SSANTNKAPRIIWPATLAASFALGMLVMSTLRPGPDANWVDIVASYQALYVTETLAGAPQSREMTYSVLKRAQDEFGVDL
EGVLEIEGLTFKRAQMLSLDGAPLIQMAYLDAQGQPFAFCLTPQKADDRGNQTRMSFDLATSSWVEDGIGYVLVGGQDDA
LTRAIATRFRRAI

Specific function: Unknown

COG id: COG5662

COG function: function code K; Predicted transmembrane transcriptional regulator (anti-sigma factor)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27312; Mature: 27181

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNVNASVTDEELTAYLDGELPPEKHAAVEAALRDNPSVQERLEGLRLPDGLLGQAFDLD
CCCCCCCCCHHHHHHEECCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCC
ALGGPAMPAALHEKIKSTAAPSSANTNKAPRIIWPATLAASFALGMLVMSTLRPGPDANW
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCH
VDIVASYQALYVTETLAGAPQSREMTYSVLKRAQDEFGVDLEGVLEIEGLTFKRAQMLSL
HHHHHHHHHHEEEHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHEEEECCCEEHHHHHEEC
DGAPLIQMAYLDAQGQPFAFCLTPQKADDRGNQTRMSFDLATSSWVEDGIGYVLVGGQDD
CCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCEEEEEEHHHHHHHHCCCCEEEECCCCH
ALTRAIATRFRRAI
HHHHHHHHHHHHCC
>Mature Secondary Structure 
SNVNASVTDEELTAYLDGELPPEKHAAVEAALRDNPSVQERLEGLRLPDGLLGQAFDLD
CCCCCCCCHHHHHHEECCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCC
ALGGPAMPAALHEKIKSTAAPSSANTNKAPRIIWPATLAASFALGMLVMSTLRPGPDANW
CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCH
VDIVASYQALYVTETLAGAPQSREMTYSVLKRAQDEFGVDLEGVLEIEGLTFKRAQMLSL
HHHHHHHHHHEEEHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHEEEECCCEEHHHHHEEC
DGAPLIQMAYLDAQGQPFAFCLTPQKADDRGNQTRMSFDLATSSWVEDGIGYVLVGGQDD
CCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCEEEEEEHHHHHHHHCCCCEEEECCCCH
ALTRAIATRFRRAI
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA