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The map label for this gene is rpoE3 [H]

Identifier: 110681161

GI number: 110681161

Start: 3894856

End: 3895332

Strand: Direct

Name: rpoE3 [H]

Synonym: RD1_4037

Alternate gene names: 110681161

Gene position: 3894856-3895332 (Clockwise)

Preceding gene: 110681154

Following gene: 110681162

Centisome position: 94.24

GC content: 54.51

Gene sequence:

>477_bases
TTGCCCGATCTGTTCCCGCGTCTGTGGCGGTTCTGCATGGTGCTGACCAAAGCCACCGACCGCGCCGATGATCTGGCACA
AAAAACGTGCGAACGTGCGTTGGCGAATGCTGAAAAGTTTAATGTAGGAACGGATCTGGACCGTTGGCTTTTTACAATTG
CGCGGCGGATTTGGCTCAATGATATCCGTGCGGACAAGGTGTGTTTGGGCGCGGGCGTCGTTCCCGTGGAAGAAATCGAC
GTTCCGAATAACAACCCTCACGTTGACGTGAATATTCTTGCAGGTGAAGTGTTAAACATTGTGCAGGCCTTGCCCGAGGG
CCAGCGCGTGACCATTTTTCTGGTCTATGTTGAGGGGTACTCCTACCGCGAGGCGGCGGAGATGCTCGACATTCCGATTG
GTACGGTCATGAGCCGACTTGCCGGTGCACGAAAGACAATTGTAGCCAGAACAGCCGCTCAGGAGCCTATAGGATGA

Upstream 100 bases:

>100_bases
GGCCGGTCATCATCGCGGCTGTGAGGCAAACACACGGGGAGCGGAATTTATTCACTCTGCAGGAAACAGAAAACGCGGCG
TTGAGGCGGTCAGTGCCGGT

Downstream 100 bases:

>100_bases
GTAATGTGAACGCCTCTGTCACCGATGAAGAGCTGACCGCATATCTCGATGGTGAATTGCCACCTGAAAAACATGCTGCC
GTTGAAGCCGCTTTGCGAGA

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MPDLFPRLWRFCMVLTKATDRADDLAQKTCERALANAEKFNVGTDLDRWLFTIARRIWLNDIRADKVCLGAGVVPVEEID
VPNNNPHVDVNILAGEVLNIVQALPEGQRVTIFLVYVEGYSYREAAEMLDIPIGTVMSRLAGARKTIVARTAAQEPIG

Sequences:

>Translated_158_residues
MPDLFPRLWRFCMVLTKATDRADDLAQKTCERALANAEKFNVGTDLDRWLFTIARRIWLNDIRADKVCLGAGVVPVEEID
VPNNNPHVDVNILAGEVLNIVQALPEGQRVTIFLVYVEGYSYREAAEMLDIPIGTVMSRLAGARKTIVARTAAQEPIG
>Mature_157_residues
PDLFPRLWRFCMVLTKATDRADDLAQKTCERALANAEKFNVGTDLDRWLFTIARRIWLNDIRADKVCLGAGVVPVEEIDV
PNNNPHVDVNILAGEVLNIVQALPEGQRVTIFLVYVEGYSYREAAEMLDIPIGTVMSRLAGARKTIVARTAAQEPIG

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 17610; Mature: 17478

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDLFPRLWRFCMVLTKATDRADDLAQKTCERALANAEKFNVGTDLDRWLFTIARRIWLN
CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHH
DIRADKVCLGAGVVPVEEIDVPNNNPHVDVNILAGEVLNIVQALPEGQRVTIFLVYVEGY
HHCCCCEEECCCCCCHHHCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCEEEEEEEEECCC
SYREAAEMLDIPIGTVMSRLAGARKTIVARTAAQEPIG
CHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PDLFPRLWRFCMVLTKATDRADDLAQKTCERALANAEKFNVGTDLDRWLFTIARRIWLN
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHH
DIRADKVCLGAGVVPVEEIDVPNNNPHVDVNILAGEVLNIVQALPEGQRVTIFLVYVEGY
HHCCCCEEECCCCCCHHHCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCEEEEEEEEECCC
SYREAAEMLDIPIGTVMSRLAGARKTIVARTAAQEPIG
CHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]