| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is hisD [H]
Identifier: 110680951
GI number: 110680951
Start: 3680861
End: 3682168
Strand: Direct
Name: hisD [H]
Synonym: RD1_3808
Alternate gene names: 110680951
Gene position: 3680861-3682168 (Clockwise)
Preceding gene: 110680948
Following gene: 110680952
Centisome position: 89.06
GC content: 59.48
Gene sequence:
>1308_bases ATGGCTCGTGAATATCTGAAAAAAGCTGAAAAGACCGCGATGACAGATGCGGGGGACGTGCGCGAAATCGTTCAAAATAT TCTGAGCGATATCGAGGCGGGTGGGGATGCCGCAGCGATGCGTTATGCGGAGCAGTTCGATAAATACGCCGGCAATGTCA TCCTGACCGACGACGAAATTGAAGCCGCCAGCGCCAAGGTCAGCCAGAAACTGAAAGATGATATTGCCTTTGCGCATGAT AATGTGCGCCGCTTTGCCGAAGTGCAGAAATCCACGATGAAGGATGTGGAGCTTGAGATCGTCCCCGGTTTGATCGCCGG GCAAAAGGCGATCCCCGTGCGCGCGGCCGGATGCTATGTTCCCGGTGGACGCTATAGTCACATCGCCAGCGCCATCATGA CCGTCACCACGGCAAAGGTGGCGGGCTGCCAGCACATCACCGCATGTTCGCCGCCGCGCCCCGATGTCGGGATCAACCCC GCCATCGTCTATGCCGCCAACCTCTGCGGTGCCGACAAAATCCTGTCCATGGGCGGGGTTCAGGGGGTCGCCGCCATGAC CTTTGGCCTCTTTGGTCTGCCAAAAGCCGACATTCTGGTCGGGCCGGGCAACCAATTTGTCGCCGAAGCCAAGCGCATCC TGTTTGGTCGCGTGGGCATTGATATGATCGCCGGGCCAACCGACAGTCTGGTCTTGGCTGATGCCACGGCGGATCCATTC ATGGTCGCAACAGACCTAGTCAGCCAGGCAGAGCATGGGTATAATTCGCCGGTCTGGCTGGTGACGGACAGCCGCGTGTT GGCGGAAAAGGTCATGGAGCTGGTGCCGGGCATGATTGACGATCTGCCAGAACTGAACCGCGACAACGCCTTTGCCGCGT GGCGCGACTATGCAGAGGTCATCGTCTGTGCCAACCGCGAGGAAATGGCCGCCTGCTCGGATGACTACGCCCCCGAACAC CTGACCGTACAGGCCGAAGACCTGCCGTGGTGGCTCGACCGGTTGCAGTGCTACGGCTCGCTCTTCCTTGGGGAAGAGAC AACCGTTTCATTTGGCGACAAAGCCTCGGGCACCAATCACGTTCTGCCAACATCGCGATCCGCAAAATACACGGGCGGTC TGTCGGTCCACAAATACATGAAAATCGTCACGTGGCAGCGCTCCACCCGGGACGGCGCACGACCGGTGGCCGAAGCCACG GCGCGGATTTCACGTCTGGAGGGGATGGAAGGGCACGCGCGCGCCGCGGATGCGCGCCTGCACAAGTATTTTCCGAACGA GAACTTTGACCTCTCAGCGGTGGATTAA
Upstream 100 bases:
>100_bases CGTCATGCAAGCGCTTACACATCTGCATACCAAGGGATTCTATTGGTGGGCAACCCCAGTATTCATCCAACTGACACATG TGACACGCTGGAGGCGCGAA
Downstream 100 bases:
>100_bases GTCAGGTGGCGGCGCTCTTTGATGTCAGCGGCAGGGTGGTTTGCGTGACCGGCGCAAGCAGCGGCCTCGGTCGACAGGCC GCCACGATGCTGGCACAGGC
Product: histidinol dehydrogenase
Products: NA
Alternate protein names: HDH 1 [H]
Number of amino acids: Translated: 435; Mature: 434
Protein sequence:
>435_residues MAREYLKKAEKTAMTDAGDVREIVQNILSDIEAGGDAAAMRYAEQFDKYAGNVILTDDEIEAASAKVSQKLKDDIAFAHD NVRRFAEVQKSTMKDVELEIVPGLIAGQKAIPVRAAGCYVPGGRYSHIASAIMTVTTAKVAGCQHITACSPPRPDVGINP AIVYAANLCGADKILSMGGVQGVAAMTFGLFGLPKADILVGPGNQFVAEAKRILFGRVGIDMIAGPTDSLVLADATADPF MVATDLVSQAEHGYNSPVWLVTDSRVLAEKVMELVPGMIDDLPELNRDNAFAAWRDYAEVIVCANREEMAACSDDYAPEH LTVQAEDLPWWLDRLQCYGSLFLGEETTVSFGDKASGTNHVLPTSRSAKYTGGLSVHKYMKIVTWQRSTRDGARPVAEAT ARISRLEGMEGHARAADARLHKYFPNENFDLSAVD
Sequences:
>Translated_435_residues MAREYLKKAEKTAMTDAGDVREIVQNILSDIEAGGDAAAMRYAEQFDKYAGNVILTDDEIEAASAKVSQKLKDDIAFAHD NVRRFAEVQKSTMKDVELEIVPGLIAGQKAIPVRAAGCYVPGGRYSHIASAIMTVTTAKVAGCQHITACSPPRPDVGINP AIVYAANLCGADKILSMGGVQGVAAMTFGLFGLPKADILVGPGNQFVAEAKRILFGRVGIDMIAGPTDSLVLADATADPF MVATDLVSQAEHGYNSPVWLVTDSRVLAEKVMELVPGMIDDLPELNRDNAFAAWRDYAEVIVCANREEMAACSDDYAPEH LTVQAEDLPWWLDRLQCYGSLFLGEETTVSFGDKASGTNHVLPTSRSAKYTGGLSVHKYMKIVTWQRSTRDGARPVAEAT ARISRLEGMEGHARAADARLHKYFPNENFDLSAVD >Mature_434_residues AREYLKKAEKTAMTDAGDVREIVQNILSDIEAGGDAAAMRYAEQFDKYAGNVILTDDEIEAASAKVSQKLKDDIAFAHDN VRRFAEVQKSTMKDVELEIVPGLIAGQKAIPVRAAGCYVPGGRYSHIASAIMTVTTAKVAGCQHITACSPPRPDVGINPA IVYAANLCGADKILSMGGVQGVAAMTFGLFGLPKADILVGPGNQFVAEAKRILFGRVGIDMIAGPTDSLVLADATADPFM VATDLVSQAEHGYNSPVWLVTDSRVLAEKVMELVPGMIDDLPELNRDNAFAAWRDYAEVIVCANREEMAACSDDYAPEHL TVQAEDLPWWLDRLQCYGSLFLGEETTVSFGDKASGTNHVLPTSRSAKYTGGLSVHKYMKIVTWQRSTRDGARPVAEATA RISRLEGMEGHARAADARLHKYFPNENFDLSAVD
Specific function: Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine [H]
COG id: COG0141
COG function: function code E; Histidinol dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the histidinol dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1788331, Length=415, Percent_Identity=35.6626506024096, Blast_Score=250, Evalue=1e-67, Organism=Saccharomyces cerevisiae, GI6319819, Length=423, Percent_Identity=33.5697399527187, Blast_Score=235, Evalue=1e-62,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016161 - InterPro: IPR022695 - InterPro: IPR001692 - InterPro: IPR012131 [H]
Pfam domain/function: PF00815 Histidinol_dh [H]
EC number: =1.1.1.23 [H]
Molecular weight: Translated: 46992; Mature: 46861
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAREYLKKAEKTAMTDAGDVREIVQNILSDIEAGGDAAAMRYAEQFDKYAGNVILTDDEI CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCH EAASAKVSQKLKDDIAFAHDNVRRFAEVQKSTMKDVELEIVPGLIAGQKAIPVRAAGCYV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHCCCCCCCEEECCEEC PGGRYSHIASAIMTVTTAKVAGCQHITACSPPRPDVGINPAIVYAANLCGADKILSMGGV CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHEEEEHHCCHHHHHHHCCC QGVAAMTFGLFGLPKADILVGPGNQFVAEAKRILFGRVGIDMIAGPTDSLVLADATADPF CHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEECCCCCCEEEEECCCCCH MVATDLVSQAEHGYNSPVWLVTDSRVLAEKVMELVPGMIDDLPELNRDNAFAAWRDYAEV HHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHE IVCANREEMAACSDDYAPEHLTVQAEDLPWWLDRLQCYGSLFLGEETTVSFGDKASGTNH EEECCCHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHEECCCCEEECCCCCCCCCC VLPTSRSAKYTGGLSVHKYMKIVTWQRSTRDGARPVAEATARISRLEGMEGHARAADARL CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH HKYFPNENFDLSAVD HHHCCCCCCCEEECC >Mature Secondary Structure AREYLKKAEKTAMTDAGDVREIVQNILSDIEAGGDAAAMRYAEQFDKYAGNVILTDDEI CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEECCCH EAASAKVSQKLKDDIAFAHDNVRRFAEVQKSTMKDVELEIVPGLIAGQKAIPVRAAGCYV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHCCCCCCCEEECCEEC PGGRYSHIASAIMTVTTAKVAGCQHITACSPPRPDVGINPAIVYAANLCGADKILSMGGV CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHEEEEHHCCHHHHHHHCCC QGVAAMTFGLFGLPKADILVGPGNQFVAEAKRILFGRVGIDMIAGPTDSLVLADATADPF CHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEECCCCCCEEEEECCCCCH MVATDLVSQAEHGYNSPVWLVTDSRVLAEKVMELVPGMIDDLPELNRDNAFAAWRDYAEV HHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHE IVCANREEMAACSDDYAPEHLTVQAEDLPWWLDRLQCYGSLFLGEETTVSFGDKASGTNH EEECCCHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHEECCCCEEECCCCCCCCCC VLPTSRSAKYTGGLSVHKYMKIVTWQRSTRDGARPVAEATARISRLEGMEGHARAADARL CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH HKYFPNENFDLSAVD HHHCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA