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The map label for this gene is yhaJ [H]

Identifier: 110680906

GI number: 110680906

Start: 3641269

End: 3642165

Strand: Direct

Name: yhaJ [H]

Synonym: RD1_3759

Alternate gene names: 110680906

Gene position: 3641269-3642165 (Clockwise)

Preceding gene: 110680902

Following gene: 110680909

Centisome position: 88.1

GC content: 62.32

Gene sequence:

>897_bases
ATGCTTGATAATGTGACGCTTGATCAGTTGCGTATGCTGGTCGCCATTGATGAAACCGGAAGCTTTACCGCCGCCGCCGC
CCGCGTGCAGCGCGCGCAGTCCGCTGTGAGCCATGCGATCCGTACGCTGGAGGCGGATCTGGATGTCGTGCTGTTTGACC
GCACGGGCCGCAAACCCGTGCGCACCCCAGCGGGTGACGCGATCATCGCAGAGGCGCGCACGATCCTTTCGCGGGTTGAT
CACCTAAAAGCGCGGGCGCGCGGTATTTCGGCGGGTATGGAGAGCGAGATTTGCCTCGCCACTTCGGTCATTGCGCCGCG
CGAGGGCGTTCTGGATTTGCTGGATGCCTTTCGCGCAGAGTTTCCCACAATCGGGCTGCGCTTGTTTGTCGAGGAAATCG
GCGGCGTGCCACAACTGTTGATGGATGGTCGCGCCGATCTGGGGCTCTTGGGCAAACCCAGTCTTGCCGGTGCGGTTTTT
GAGCCGCTGGAGGCTACTGCTGTCGGCACCTCGGACGTGGTCGCGGTGGCACGTCCTGATCATCCACTCGCGATGATGGA
CCGCCCGCTGACCGAAGTCGATCTGACCGACCACCGCCAGCTTGTGCCCACCAGCCGCGCGCTGCCGCGCTACCTCAACC
GGATGGTCAACGACATCTGGGAGATTGCAGAATTGGACATGCGCCACGAGATGCTGAGACGTGGCATGGGCTGGGGCACC
GTGCCAACCTATCTGGTGGAACGCGACCTTGCATCCGGTCGGCTGGTCACCCTCGATATTTCCGCCCGACCGGATGAGGT
GATGCGCGTACCGCTGTTCGCCGCGCATAAGAAAGACGCCGCTATTGGCCCCGCGACCCGGTGGCTAATTGAGAAGATGG
GCGAGGTATTCGGGTAA

Upstream 100 bases:

>100_bases
GCAGTTTTTCTTTTCTTGAAGCAAGATATAGCAACGCCAGATTCTCCTTGAACTGCGAAAAAATCTCTGCAACCCATCTG
ATATTCAGATGGGTAAGTAG

Downstream 100 bases:

>100_bases
ATCGCTCAGGGTATCGATGACCCAACCCGACAATAAACGGGATCGAATGTGCAGCATCGACTTGGATCTACCCGATTGAA
CCGGCCATTCGCGGCTTTGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MLDNVTLDQLRMLVAIDETGSFTAAAARVQRAQSAVSHAIRTLEADLDVVLFDRTGRKPVRTPAGDAIIAEARTILSRVD
HLKARARGISAGMESEICLATSVIAPREGVLDLLDAFRAEFPTIGLRLFVEEIGGVPQLLMDGRADLGLLGKPSLAGAVF
EPLEATAVGTSDVVAVARPDHPLAMMDRPLTEVDLTDHRQLVPTSRALPRYLNRMVNDIWEIAELDMRHEMLRRGMGWGT
VPTYLVERDLASGRLVTLDISARPDEVMRVPLFAAHKKDAAIGPATRWLIEKMGEVFG

Sequences:

>Translated_298_residues
MLDNVTLDQLRMLVAIDETGSFTAAAARVQRAQSAVSHAIRTLEADLDVVLFDRTGRKPVRTPAGDAIIAEARTILSRVD
HLKARARGISAGMESEICLATSVIAPREGVLDLLDAFRAEFPTIGLRLFVEEIGGVPQLLMDGRADLGLLGKPSLAGAVF
EPLEATAVGTSDVVAVARPDHPLAMMDRPLTEVDLTDHRQLVPTSRALPRYLNRMVNDIWEIAELDMRHEMLRRGMGWGT
VPTYLVERDLASGRLVTLDISARPDEVMRVPLFAAHKKDAAIGPATRWLIEKMGEVFG
>Mature_298_residues
MLDNVTLDQLRMLVAIDETGSFTAAAARVQRAQSAVSHAIRTLEADLDVVLFDRTGRKPVRTPAGDAIIAEARTILSRVD
HLKARARGISAGMESEICLATSVIAPREGVLDLLDAFRAEFPTIGLRLFVEEIGGVPQLLMDGRADLGLLGKPSLAGAVF
EPLEATAVGTSDVVAVARPDHPLAMMDRPLTEVDLTDHRQLVPTSRALPRYLNRMVNDIWEIAELDMRHEMLRRGMGWGT
VPTYLVERDLASGRLVTLDISARPDEVMRVPLFAAHKKDAAIGPATRWLIEKMGEVFG

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789492, Length=298, Percent_Identity=29.1946308724832, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI87082024, Length=292, Percent_Identity=29.1095890410959, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787949, Length=292, Percent_Identity=28.4246575342466, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1786508, Length=284, Percent_Identity=27.112676056338, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1787879, Length=184, Percent_Identity=34.2391304347826, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786713, Length=192, Percent_Identity=29.6875, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI145693105, Length=182, Percent_Identity=27.4725274725275, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786401, Length=312, Percent_Identity=27.2435897435897, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787530, Length=180, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788297, Length=244, Percent_Identity=27.0491803278689, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32558; Mature: 32558

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDNVTLDQLRMLVAIDETGSFTAAAARVQRAQSAVSHAIRTLEADLDVVLFDRTGRKPV
CCCCCCHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
RTPAGDAIIAEARTILSRVDHLKARARGISAGMESEICLATSVIAPREGVLDLLDAFRAE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHC
FPTIGLRLFVEEIGGVPQLLMDGRADLGLLGKPSLAGAVFEPLEATAVGTSDVVAVARPD
CCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCHHHHHHCCHHHHHCCCCCEEEEECCC
HPLAMMDRPLTEVDLTDHRQLVPTSRALPRYLNRMVNDIWEIAELDMRHEMLRRGMGWGT
CCHHHHCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VPTYLVERDLASGRLVTLDISARPDEVMRVPLFAAHKKDAAIGPATRWLIEKMGEVFG
HHHHHHHHHCCCCEEEEEEECCCCHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLDNVTLDQLRMLVAIDETGSFTAAAARVQRAQSAVSHAIRTLEADLDVVLFDRTGRKPV
CCCCCCHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
RTPAGDAIIAEARTILSRVDHLKARARGISAGMESEICLATSVIAPREGVLDLLDAFRAE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHC
FPTIGLRLFVEEIGGVPQLLMDGRADLGLLGKPSLAGAVFEPLEATAVGTSDVVAVARPD
CCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCHHHHHHCCHHHHHCCCCCEEEEECCC
HPLAMMDRPLTEVDLTDHRQLVPTSRALPRYLNRMVNDIWEIAELDMRHEMLRRGMGWGT
CCHHHHCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VPTYLVERDLASGRLVTLDISARPDEVMRVPLFAAHKKDAAIGPATRWLIEKMGEVFG
HHHHHHHHHCCCCEEEEEEECCCCHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]