| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is mhpR [C]
Identifier: 110680802
GI number: 110680802
Start: 3512727
End: 3513515
Strand: Direct
Name: mhpR [C]
Synonym: RD1_3649
Alternate gene names: 110680802
Gene position: 3512727-3513515 (Clockwise)
Preceding gene: 110680797
Following gene: 110680804
Centisome position: 84.99
GC content: 59.44
Gene sequence:
>789_bases ATGACCAAGTTGAACCGCTCTGTCGAGCGCAGCATGAAAATACTCGAAGTCGTTTCCGGTAGCGGCGTGACGTCACTGGC TTTTTTGGCCGAACAAACCGGACTGCCGAAGCCCACGATCATGAGAATCTGTGCCACTCCGGTCAACCAAAGGTGGCTCA CGCAAAGCCGAAGCGACAGCCGATACAGGATCGGGTCGCGATTTCCGCGCCTTGGCGCTGCGCCGGCCGCGCTCGACGCT CTGGTCGAGGCGGGCAGTTCGGAAATTGTCCATTTGTCCGAAGAAACCGGTGTCGGTGTGGATCTTGCAGCAGCAATCGG AAACGGGCGCGTCGAAATCGTCGACACAACCCGAAAATTCTCCGAACATGGTATCTTTCCCGACTGTATCGGCTACCGGC CATCGCCGTTTCGCTCGGCTTTGGGATGCGCGTTTCTGGCAGCACTTGGCGCGGATGAAAGGGCTGAGGTCGCCGCCAAA CTGGCTGTGAACACCAAGGGCAAAGACCGAGAGGCCGCCTTGCGCCTGCCAGACAAATTAAGGGAGATCAGGACAAAGGG ATATGCCACGCGCGAATACGGATATTGGGGCCGCGCAGTGGATTATGGCGGCATTCCAAATGCGATCAGCGTGGCCATGC GTGCTGACGGGCGCGCCATCGGGGCGCTCAGTCTGGTCTGGCTGGCCGAGAGAAACAGCGTTGAGGAGGTCGCCGACGCA TATCTTGAGCGGCTCACCGAAGCCGCAGACGCCATAGGTCGGCACTTTGCCTCCGGCGCTGACATTTAG
Upstream 100 bases:
>100_bases GGTTGCAGCGCTTTTTCCCCCGCGCCGCCCCGCCTCTGAAACAAATATCTAGATAGAAAAGCCGATCCGGTCGAACATGC GTTTCACCAGGTGGAATGCG
Downstream 100 bases:
>100_bases GCCCTGATGCCGCCTTGCGCTTGGATCAGGGGCTTCCGTGCCTCAGACCACACCGCGCCCGGTTGCTTTCCAGCGCTTTC CAAGGGCCGACGCACCACTG
Product: transcriptional regulator, putative
Products: NA
Alternate protein names: Transcriptional Regulator; Transcriptional Regulator IclR Family
Number of amino acids: Translated: 262; Mature: 261
Protein sequence:
>262_residues MTKLNRSVERSMKILEVVSGSGVTSLAFLAEQTGLPKPTIMRICATPVNQRWLTQSRSDSRYRIGSRFPRLGAAPAALDA LVEAGSSEIVHLSEETGVGVDLAAAIGNGRVEIVDTTRKFSEHGIFPDCIGYRPSPFRSALGCAFLAALGADERAEVAAK LAVNTKGKDREAALRLPDKLREIRTKGYATREYGYWGRAVDYGGIPNAISVAMRADGRAIGALSLVWLAERNSVEEVADA YLERLTEAADAIGRHFASGADI
Sequences:
>Translated_262_residues MTKLNRSVERSMKILEVVSGSGVTSLAFLAEQTGLPKPTIMRICATPVNQRWLTQSRSDSRYRIGSRFPRLGAAPAALDA LVEAGSSEIVHLSEETGVGVDLAAAIGNGRVEIVDTTRKFSEHGIFPDCIGYRPSPFRSALGCAFLAALGADERAEVAAK LAVNTKGKDREAALRLPDKLREIRTKGYATREYGYWGRAVDYGGIPNAISVAMRADGRAIGALSLVWLAERNSVEEVADA YLERLTEAADAIGRHFASGADI >Mature_261_residues TKLNRSVERSMKILEVVSGSGVTSLAFLAEQTGLPKPTIMRICATPVNQRWLTQSRSDSRYRIGSRFPRLGAAPAALDAL VEAGSSEIVHLSEETGVGVDLAAAIGNGRVEIVDTTRKFSEHGIFPDCIGYRPSPFRSALGCAFLAALGADERAEVAAKL AVNTKGKDREAALRLPDKLREIRTKGYATREYGYWGRAVDYGGIPNAISVAMRADGRAIGALSLVWLAERNSVEEVADAY LERLTEAADAIGRHFASGADI
Specific function: Activator Of The Mhprabcdef Operon Coding For Components Of The 3-Hydroxyphenylpropionate Degradation Pathway. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI145693096, Length=247, Percent_Identity=27.1255060728745, Blast_Score=64, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28166; Mature: 28035
Theoretical pI: Translated: 8.45; Mature: 8.45
Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKLNRSVERSMKILEVVSGSGVTSLAFLAEQTGLPKPTIMRICATPVNQRWLTQSRSDS CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHCCCCCC RYRIGSRFPRLGAAPAALDALVEAGSSEIVHLSEETGVGVDLAAAIGNGRVEIVDTTRKF CEEHHCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCEEEEEECCCCEEEEEECHHHH SEHGIFPDCIGYRPSPFRSALGCAFLAALGADERAEVAAKLAVNTKGKDREAALRLPDKL HHCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHCCHHHH REIRTKGYATREYGYWGRAVDYGGIPNAISVAMRADGRAIGALSLVWLAERNSVEEVADA HHHHHCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHH YLERLTEAADAIGRHFASGADI HHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure TKLNRSVERSMKILEVVSGSGVTSLAFLAEQTGLPKPTIMRICATPVNQRWLTQSRSDS CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHCCCCCC RYRIGSRFPRLGAAPAALDALVEAGSSEIVHLSEETGVGVDLAAAIGNGRVEIVDTTRKF CEEHHCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCEEEEEECCCCEEEEEECHHHH SEHGIFPDCIGYRPSPFRSALGCAFLAALGADERAEVAAKLAVNTKGKDREAALRLPDKL HHCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHCCHHHH REIRTKGYATREYGYWGRAVDYGGIPNAISVAMRADGRAIGALSLVWLAERNSVEEVADA HHHHHCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHH YLERLTEAADAIGRHFASGADI HHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA