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The map label for this gene is yhcZ [H]

Identifier: 110680738

GI number: 110680738

Start: 3439994

End: 3440608

Strand: Direct

Name: yhcZ [H]

Synonym: RD1_3579

Alternate gene names: 110680738

Gene position: 3439994-3440608 (Clockwise)

Preceding gene: 110680722

Following gene: 110680739

Centisome position: 83.23

GC content: 57.56

Gene sequence:

>615_bases
ATGCGTATTCTATTGGCAGACGATCATGGGTTGGTCCGCGACACGATCTCGGCCTACCTCGAAACCGAAGGGCGTGCAGC
GGTCATCGCTGTCCAAGACTATGGCGAGGCTATGAAAACGCTGCGCAGCAAAGGCCCCTTTGATCTGGTTCTGCTGGACT
TTGGCATGCCCGGAATGAACGGGTTGGACGGGTTGTCCGAGGCGATCAAGTCTCACCCCAATCAGCCGTTTGCGATCCTG
AGCGGCACGGCCCCGAACCGCATTGCACAACAAGCCGTGGCGCGTGGCGCAATCGGATATCTGCCCAAGTCGATGGGCGC
AAAATCACTGGTCAACGCGGTAAGGTTCATGATCGCGGGGGAAACATATGTGCCCGCATCCCTCCTTGGAGAAAGCGGCG
AGACAGGCGAAACCGAGTTCACAAAAAAGCTGAGCAGGCGCGAAAAGCAGGTGTTGAGCGGCCTGTGCAACGGCAAATCC
AACAAGGAGATCGCCCGCGATTTGGACCTGCAGGAAGTCACGATCAAATTGCATGTGCGCACCCTGTGCAAGAAGCTCGA
CGCAAAGAACCGCACACAGGCCGCCATGATCGCGCGAAACGCGGGCTTTGAATAG

Upstream 100 bases:

>100_bases
AGTGACAGGTCACACCTCGGCAAAAAGACGTTGCACGGGCGCGCCCGGCCTTTTCAGTTGTGCTATGTGGTGCGAAAGAT
GAAGTAAGCAGGTAGTGGAA

Downstream 100 bases:

>100_bases
GCGACACTGTCCAGCGCCCGGCCTTTCGAACACCACCTATCCTTTCGGTCACACGCCCCCCCTTTTTTGTGCGCGTCCCA
CCCCTTCGCATGCGGGCAGG

Product: LuxR family DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MRILLADDHGLVRDTISAYLETEGRAAVIAVQDYGEAMKTLRSKGPFDLVLLDFGMPGMNGLDGLSEAIKSHPNQPFAIL
SGTAPNRIAQQAVARGAIGYLPKSMGAKSLVNAVRFMIAGETYVPASLLGESGETGETEFTKKLSRREKQVLSGLCNGKS
NKEIARDLDLQEVTIKLHVRTLCKKLDAKNRTQAAMIARNAGFE

Sequences:

>Translated_204_residues
MRILLADDHGLVRDTISAYLETEGRAAVIAVQDYGEAMKTLRSKGPFDLVLLDFGMPGMNGLDGLSEAIKSHPNQPFAIL
SGTAPNRIAQQAVARGAIGYLPKSMGAKSLVNAVRFMIAGETYVPASLLGESGETGETEFTKKLSRREKQVLSGLCNGKS
NKEIARDLDLQEVTIKLHVRTLCKKLDAKNRTQAAMIARNAGFE
>Mature_204_residues
MRILLADDHGLVRDTISAYLETEGRAAVIAVQDYGEAMKTLRSKGPFDLVLLDFGMPGMNGLDGLSEAIKSHPNQPFAIL
SGTAPNRIAQQAVARGAIGYLPKSMGAKSLVNAVRFMIAGETYVPASLLGESGETGETEFTKKLSRREKQVLSGLCNGKS
NKEIARDLDLQEVTIKLHVRTLCKKLDAKNRTQAAMIARNAGFE

Specific function: Member of the two-component regulatory system yhcY/yhcZ [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=201, Percent_Identity=30.3482587064677, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788222, Length=210, Percent_Identity=27.6190476190476, Blast_Score=78, Evalue=3e-16,
Organism=Escherichia coli, GI1786747, Length=188, Percent_Identity=28.1914893617021, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787473, Length=201, Percent_Identity=33.8308457711443, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1789937, Length=154, Percent_Identity=29.8701298701299, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790102, Length=198, Percent_Identity=28.7878787878788, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788712, Length=190, Percent_Identity=25.2631578947368, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22048; Mature: 22048

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILLADDHGLVRDTISAYLETEGRAAVIAVQDYGEAMKTLRSKGPFDLVLLDFGMPGMN
CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHCCCCEEEEEEECCCCCCC
GLDGLSEAIKSHPNQPFAILSGTAPNRIAQQAVARGAIGYLPKSMGAKSLVNAVRFMIAG
CHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCC
ETYVPASLLGESGETGETEFTKKLSRREKQVLSGLCNGKSNKEIARDLDLQEVTIKLHVR
CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHH
TLCKKLDAKNRTQAAMIARNAGFE
HHHHHHCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MRILLADDHGLVRDTISAYLETEGRAAVIAVQDYGEAMKTLRSKGPFDLVLLDFGMPGMN
CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHCCCCEEEEEEECCCCCCC
GLDGLSEAIKSHPNQPFAILSGTAPNRIAQQAVARGAIGYLPKSMGAKSLVNAVRFMIAG
CHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCC
ETYVPASLLGESGETGETEFTKKLSRREKQVLSGLCNGKSNKEIARDLDLQEVTIKLHVR
CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHH
TLCKKLDAKNRTQAAMIARNAGFE
HHHHHHCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]