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The map label for this gene is pucA [H]

Identifier: 110680704

GI number: 110680704

Start: 3411142

End: 3411498

Strand: Direct

Name: pucA [H]

Synonym: RD1_3544

Alternate gene names: 110680704

Gene position: 3411142-3411498 (Clockwise)

Preceding gene: 110680703

Following gene: 110680705

Centisome position: 82.53

GC content: 57.42

Gene sequence:

>357_bases
ATGAACAATGCAAAAATGTGGCTTGTCGTTTCCCCATCTGTCGGCGTTCCGGTCTTTCTGGGCGCAGTCGCTGTAGGCTC
ATTCGCGGTACATGTTGCCGTGCTGAGCAACACCTCATGGGTCTCCGACTTCCTGTCGGGCAATGAGCTGGGAAGCGGCG
ATGCGCAAGAAGCGGCCGCAAGGATCCTGGAGAACGCGGATAATGACGTGGCAAACGCCTCTTACGTAGTTCCCTCCGCA
GATGGCAGCCAGCAGGTGCTAGTGGTGATGCCGGATGGCACAACGGCGATGGCGACGTTGCAATCCCCGTCCTACGTTCA
GGCCAGCGTTACGCAGCCTGTAACCATAGAGCAATAA

Upstream 100 bases:

>100_bases
CTACCTGATTGATGGTACCCGTGTCTTTGGTGCAATCGCACTCGTTGCCCACATGCTTGTCGCTGCGTCGACGCCGTGGC
TCGGATAAGGGGGAAAACAC

Downstream 100 bases:

>100_bases
CGCGCGGTCCCTCGCCCTTGTGGCGGGGGGCTTGCGACACCCATACCTGCGGGGTCACTGCACCAGCAGGTCCAATTTGA
ATAAGAATGGCGGGAGGATA

Product: light-harvesting protein B-800/850, alpha chain

Products: NA

Alternate protein names: Antenna pigment protein alpha chain; LH-2 [H]

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MNNAKMWLVVSPSVGVPVFLGAVAVGSFAVHVAVLSNTSWVSDFLSGNELGSGDAQEAAARILENADNDVANASYVVPSA
DGSQQVLVVMPDGTTAMATLQSPSYVQASVTQPVTIEQ

Sequences:

>Translated_118_residues
MNNAKMWLVVSPSVGVPVFLGAVAVGSFAVHVAVLSNTSWVSDFLSGNELGSGDAQEAAARILENADNDVANASYVVPSA
DGSQQVLVVMPDGTTAMATLQSPSYVQASVTQPVTIEQ
>Mature_118_residues
MNNAKMWLVVSPSVGVPVFLGAVAVGSFAVHVAVLSNTSWVSDFLSGNELGSGDAQEAAARILENADNDVANASYVVPSA
DGSQQVLVVMPDGTTAMATLQSPSYVQASVTQPVTIEQ

Specific function: Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the antena complex alpha subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000066
- InterPro:   IPR018332 [H]

Pfam domain/function: PF00556 LHC [H]

EC number: NA

Molecular weight: Translated: 12124; Mature: 12124

Theoretical pI: Translated: 3.70; Mature: 3.70

Prosite motif: PS00968 ANTENNA_COMP_ALPHA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNAKMWLVVSPSVGVPVFLGAVAVGSFAVHVAVLSNTSWVSDFLSGNELGSGDAQEAAA
CCCCEEEEEECCCCCCHHHHHHHHHCCEEEEEEEECCCHHHHHHHCCCCCCCCCHHHHHH
RILENADNDVANASYVVPSADGSQQVLVVMPDGTTAMATLQSPSYVQASVTQPVTIEQ
HHHHCCCCCCCCCEEEEECCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCEEECC
>Mature Secondary Structure
MNNAKMWLVVSPSVGVPVFLGAVAVGSFAVHVAVLSNTSWVSDFLSGNELGSGDAQEAAA
CCCCEEEEEECCCCCCHHHHHHHHHCCEEEEEEEECCCHHHHHHHCCCCCCCCCHHHHHH
RILENADNDVANASYVVPSADGSQQVLVVMPDGTTAMATLQSPSYVQASVTQPVTIEQ
HHHHCCCCCCCCCEEEEECCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9130598; 7628614 [H]