Click here to switch to the map view.

The map label for this gene is 110680675

Identifier: 110680675

GI number: 110680675

Start: 3377213

End: 3377668

Strand: Direct

Name: 110680675

Synonym: RD1_3514

Alternate gene names: NA

Gene position: 3377213-3377668 (Clockwise)

Preceding gene: 110680672

Following gene: 110680680

Centisome position: 81.71

GC content: 57.68

Gene sequence:

>456_bases
ATGCGCCCAAAATCACCAAGAATTGCGGCACGCGCGATCATCGTCAGGAACAACCGTATTCTTCTGGTAAACGCCTGGCC
TGACGGCAAAAGCACGCTGCTTTGTGCGCCCGGTGGTGGGGTGCACGTCGGCACCTCGCTGCCGCAGAACCTTGCGCGCG
AAGTCCATGAAGAAACCGGCTTGCGCATCGAGGTCGGTGCCCCCTGCCTCATCAACGAGTTTCACGACCCCGATACGGGC
TTTCACCAGATCGAGGTATTCTTTCGGTGCACATTGTCGGGCAGCGACACGATTGACCCCGACTGGAATGATCCGGAAAA
CATCGTCTCCCAATGGGTCTGGGCATCACCGGAGGAGATGAAAAACCACAGGGTGAAACCCGACAGCCTGTTTCCGGTCG
CGTTCGGGGACGAGATGGCATTCAGCTACGATCCGCTGGAGACGATTGTTTTGTGA

Upstream 100 bases:

>100_bases
TCAAAACAGATAAGAAGACGCGTTTCATAGGCTGTCAGATAGAGCTATTGTGCGCCATTAAAAAGGACGACGTAACGCTG
TTTGACAGGAATTTGCACGA

Downstream 100 bases:

>100_bases
CCGCAAGGCCGATGCCCGCGACAACAAGTGCCGCCGCCACTGCGATTTCGAGGGTAAGGCGTTCATTCAGCACCAGGGCC
CCAGCGAGGATCGCGATGAT

Product: hydrolase, putative

Products: NA

Alternate protein names: NUDIX Hydrolase; NUDIX Hydrolase MutT; Nudix Hydrolase; Hydrolase; Mutt/Nudix Family Protein; Hydrolase NUDIX Family

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MRPKSPRIAARAIIVRNNRILLVNAWPDGKSTLLCAPGGGVHVGTSLPQNLAREVHEETGLRIEVGAPCLINEFHDPDTG
FHQIEVFFRCTLSGSDTIDPDWNDPENIVSQWVWASPEEMKNHRVKPDSLFPVAFGDEMAFSYDPLETIVL

Sequences:

>Translated_151_residues
MRPKSPRIAARAIIVRNNRILLVNAWPDGKSTLLCAPGGGVHVGTSLPQNLAREVHEETGLRIEVGAPCLINEFHDPDTG
FHQIEVFFRCTLSGSDTIDPDWNDPENIVSQWVWASPEEMKNHRVKPDSLFPVAFGDEMAFSYDPLETIVL
>Mature_151_residues
MRPKSPRIAARAIIVRNNRILLVNAWPDGKSTLLCAPGGGVHVGTSLPQNLAREVHEETGLRIEVGAPCLINEFHDPDTG
FHQIEVFFRCTLSGSDTIDPDWNDPENIVSQWVWASPEEMKNHRVKPDSLFPVAFGDEMAFSYDPLETIVL

Specific function: Unknown

COG id: COG0494

COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16846; Mature: 16846

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPKSPRIAARAIIVRNNRILLVNAWPDGKSTLLCAPGGGVHVGTSLPQNLAREVHEETG
CCCCCCCEEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEECCCCHHHHHHHHHHHCC
LRIEVGAPCLINEFHDPDTGFHQIEVFFRCTLSGSDTIDPDWNDPENIVSQWVWASPEEM
CEEEECCCEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCHHHH
KNHRVKPDSLFPVAFGDEMAFSYDPLETIVL
HHCCCCCCCEEEEEECCCCEECCCCHHHHCC
>Mature Secondary Structure
MRPKSPRIAARAIIVRNNRILLVNAWPDGKSTLLCAPGGGVHVGTSLPQNLAREVHEETG
CCCCCCCEEEEEEEEECCEEEEEECCCCCCEEEEECCCCCEEECCCCHHHHHHHHHHHCC
LRIEVGAPCLINEFHDPDTGFHQIEVFFRCTLSGSDTIDPDWNDPENIVSQWVWASPEEM
CEEEECCCEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCHHHH
KNHRVKPDSLFPVAFGDEMAFSYDPLETIVL
HHCCCCCCCEEEEEECCCCEECCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA