Click here to switch to the map view.

The map label for this gene is 110680556

Identifier: 110680556

GI number: 110680556

Start: 3252486

End: 3253541

Strand: Direct

Name: 110680556

Synonym: RD1_3385

Alternate gene names: NA

Gene position: 3252486-3253541 (Clockwise)

Preceding gene: 110680551

Following gene: 110680560

Centisome position: 78.69

GC content: 60.51

Gene sequence:

>1056_bases
TTGCCTGCTTTGCGTAAACCCCAAAACGGCAGGAGATTAAAGAGGTATACGATGCGGCGTCTGGTTTGGTTGGGGTTTAT
CTTTGCCGTGTTATGGAGCGGATGGTGGTTTTTTGCCGCCTCTGGCTTGCAGTCGGGCCTGACGCGCTGGTTCGAGGACC
GGCGCAGCGATGGCTGGCAGGCCGAAATAGCGGACACAGCGCTTTCCGGGTTCCCTTTGAAACTGGATGTAACACTGGCG
CGGCCCATGCTGGCAGATCCCGAAACCGGCGTCGCCTTTGAGACCTCCTCGGTCATGATCAGCGCGCCGACCTATTGGCC
GGGCTATGTGTCGTTGTTTTTCCCGCAAGACGAGATGCTGTTTGCCAGCCCATCCGGTCGCAGCACCTTAACAGCCGATA
CGGCGGTCGCCAATCTGCGCCTGCATCCGGGTGCTACACTGGAAGTGGAAGAACTGGCGCTGACGTCCGGCCCGTGGCGT
CTTGACACGCCGGACGGCAGCCTGATGTCCGCGCAAGGGCTGTCTGTTGGCATGCGGCAGGACGTCGAAAACGCAAACCG
GTATGCCGTGACGCTGGATGCGCCCGCCTTTCAACCAGGCAGCGTGCCGCGCGCTGCACTGCGAATCCCAACGGATTGGC
CGATCGCCTTTGACAGCCTGACGATGGACATGACCATCACCTTCGATCGCCCGTTTGACCGCAGCACACTTGAAACACAA
CGACCGCAGCCGCGCAGAATTGATCTGTCGCTGGCTCAGGCCGCATGGGGCACGTTGTTGTTGCGCGGGGCTGCAGATCT
GGATGTCAGCGCCACAGGCGCCATGACCGGTGAGGTTTCCTTGCAGGCAAAGAACTGGCAGGACATGCTGGTTCTGGCCG
AAACCGCCGGTGTTTTGCCCCCCGCCCTCAAGCCACAGGCAGAGAACATTCTGCAAGCGCTCGCGCGCGGCAGCGGCAAT
CCGAATTCAATAGATGTCACCCTGTCGTTGCGCGACGGTACGGTCTTTCTCGGCTTTATACCGTTGGGGCAAGCCCCCCT
GCTCATCCTGCGTTAA

Upstream 100 bases:

>100_bases
CCGGGCAAGGTCGCGATAACCTGTTCGGCCACCTCAAAACCCGGGTTCCACAGCAGACTGCCATAGCCAAATACCCACAT
CGTCATTGCACTGGTTCTCC

Downstream 100 bases:

>100_bases
CGGCAGTAGGGGCCACTGCGGTAGCGGGCTGTGTCAAAGTGAAAGTGATCCCGGTGAAACCGATCTGATTCCGGCCCGAG
CACCGTGCCGAATGGCCCAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MPALRKPQNGRRLKRYTMRRLVWLGFIFAVLWSGWWFFAASGLQSGLTRWFEDRRSDGWQAEIADTALSGFPLKLDVTLA
RPMLADPETGVAFETSSVMISAPTYWPGYVSLFFPQDEMLFASPSGRSTLTADTAVANLRLHPGATLEVEELALTSGPWR
LDTPDGSLMSAQGLSVGMRQDVENANRYAVTLDAPAFQPGSVPRAALRIPTDWPIAFDSLTMDMTITFDRPFDRSTLETQ
RPQPRRIDLSLAQAAWGTLLLRGAADLDVSATGAMTGEVSLQAKNWQDMLVLAETAGVLPPALKPQAENILQALARGSGN
PNSIDVTLSLRDGTVFLGFIPLGQAPLLILR

Sequences:

>Translated_351_residues
MPALRKPQNGRRLKRYTMRRLVWLGFIFAVLWSGWWFFAASGLQSGLTRWFEDRRSDGWQAEIADTALSGFPLKLDVTLA
RPMLADPETGVAFETSSVMISAPTYWPGYVSLFFPQDEMLFASPSGRSTLTADTAVANLRLHPGATLEVEELALTSGPWR
LDTPDGSLMSAQGLSVGMRQDVENANRYAVTLDAPAFQPGSVPRAALRIPTDWPIAFDSLTMDMTITFDRPFDRSTLETQ
RPQPRRIDLSLAQAAWGTLLLRGAADLDVSATGAMTGEVSLQAKNWQDMLVLAETAGVLPPALKPQAENILQALARGSGN
PNSIDVTLSLRDGTVFLGFIPLGQAPLLILR
>Mature_350_residues
PALRKPQNGRRLKRYTMRRLVWLGFIFAVLWSGWWFFAASGLQSGLTRWFEDRRSDGWQAEIADTALSGFPLKLDVTLAR
PMLADPETGVAFETSSVMISAPTYWPGYVSLFFPQDEMLFASPSGRSTLTADTAVANLRLHPGATLEVEELALTSGPWRL
DTPDGSLMSAQGLSVGMRQDVENANRYAVTLDAPAFQPGSVPRAALRIPTDWPIAFDSLTMDMTITFDRPFDRSTLETQR
PQPRRIDLSLAQAAWGTLLLRGAADLDVSATGAMTGEVSLQAKNWQDMLVLAETAGVLPPALKPQAENILQALARGSGNP
NSIDVTLSLRDGTVFLGFIPLGQAPLLILR

Specific function: Unknown

COG id: COG4093

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38406; Mature: 38275

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPALRKPQNGRRLKRYTMRRLVWLGFIFAVLWSGWWFFAASGLQSGLTRWFEDRRSDGWQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCE
AEIADTALSGFPLKLDVTLARPMLADPETGVAFETSSVMISAPTYWPGYVSLFFPQDEML
EEEHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEECCEEEECCCCCCCEEEEEECCCCEE
FASPSGRSTLTADTAVANLRLHPGATLEVEELALTSGPWRLDTPDGSLMSAQGLSVGMRQ
EECCCCCCEEEECCEEEEEEECCCCEEEHHHEEECCCCEEEECCCCCEEECCCCCCCCHH
DVENANRYAVTLDAPAFQPGSVPRAALRIPTDWPIAFDSLTMDMTITFDRPFDRSTLETQ
HHCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCEEECCEEEEEEEEECCCCCCCCHHCC
RPQPRRIDLSLAQAAWGTLLLRGAADLDVSATGAMTGEVSLQAKNWQDMLVLAETAGVLP
CCCCCEEEHHHHHHHHHHEEEECCCCCCEEECCCEEEEEEEEECCCCEEEEEEECCCCCC
PALKPQAENILQALARGSGNPNSIDVTLSLRDGTVFLGFIPLGQAPLLILR
CCCCCCHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEEEECCCCCEEEEC
>Mature Secondary Structure 
PALRKPQNGRRLKRYTMRRLVWLGFIFAVLWSGWWFFAASGLQSGLTRWFEDRRSDGWQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCE
AEIADTALSGFPLKLDVTLARPMLADPETGVAFETSSVMISAPTYWPGYVSLFFPQDEML
EEEHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEECCEEEECCCCCCCEEEEEECCCCEE
FASPSGRSTLTADTAVANLRLHPGATLEVEELALTSGPWRLDTPDGSLMSAQGLSVGMRQ
EECCCCCCEEEECCEEEEEEECCCCEEEHHHEEECCCCEEEECCCCCEEECCCCCCCCHH
DVENANRYAVTLDAPAFQPGSVPRAALRIPTDWPIAFDSLTMDMTITFDRPFDRSTLETQ
HHCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCEEECCEEEEEEEEECCCCCCCCHHCC
RPQPRRIDLSLAQAAWGTLLLRGAADLDVSATGAMTGEVSLQAKNWQDMLVLAETAGVLP
CCCCCEEEHHHHHHHHHHEEEECCCCCCEEECCCEEEEEEEEECCCCEEEEEEECCCCCC
PALKPQAENILQALARGSGNPNSIDVTLSLRDGTVFLGFIPLGQAPLLILR
CCCCCCHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEEEECCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA