BacMap

Definition	Roseobacter denitrificans OCh 114, complete genome.
Accession	NC_008209
Length	4,133,097

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The map label for this gene is ygfF [H]

Identifier: 110680506

GI number: 110680506

Start: 3194062

End: 3194802

Strand: Direct

Name: ygfF [H]

Synonym: RD1_3328

Alternate gene names: 110680506

Gene position: 3194062-3194802 (Clockwise)

Preceding gene: 110680505

Following gene: 110680507

Centisome position: 77.28

GC content: 62.21

Gene sequence:

>741_bases
ATGAAACCCATCATGCTGATCACAGGCGCATCCGCCGGAATTGGTGCCGCCTGCGCCACCATCGCGGCCACGCGCGGTTT
CGATTTGGCGCTGAACTATCGCTCGGATGATGCGGGGGCTGAAGCGGTGGCCCAAAGCTGTCGCGCCGCAGGTGCTGAGG
TGCTGCTGTGCAAGGGCGATGTATCTGACCCGGCGGCCATTGATGCGATTTATGCCAGCATTGATGCGAGCTACGGGCGG
CTGGATGCGCTGATCAACAACGCAGGTGTGGTGGATCAGACCGCGAAGGTCACTGACATGAGCCATGAGCGTCTGCGCCG
CATGTTCGACATCAATGTCATCGGGGCCATTCTGGTGGCCAAGGCCGCCGTGCAGCGCATGCAGGCGCAGGGCGATGGCG
GGGTGATTGTCAATATTTCCTCGGCAGCAGCGCGTCTGGGGTCGGGCAATCAATACGTGGATTACGCTGCCTCCAAAGCG
GCCATCGACACCTTTACCAAGGGGCTGTCGGATGAGGTCGCGGCCGATAATATCCGCGTCATGGCCATCCGCCCTGGCCT
GATCGAGACCGAGCTTCACGCCAAGGGCGGCGAGCCGGGGCGTGCGGACAAGCTGGCGCATATGGTCCCGATGAAACGCA
AAGGCTCTGCCGAAGAAGTGGCGCAGGCGATCCTGTGGCTGTGTTCTGACGAGGCGAGCTACGTTACGGGGTCCACGCTG
GATGTGACGGGTGGACGCTGA

Upstream 100 bases:

>100_bases
CCAGCAGAAAATCGCGGCAGCGCTCGATCGTATCCTTGCGACGCCCGGTCTGTCGCGTGACACCACCGAAATGCTGACCA
GAATAAGAGGGAGCTGAGCG

Downstream 100 bases:

>100_bases
CGATTTCAGCTTTCGACGTCAAGGACGCAGCCGCGCCGCCCTTTTGACGGTTACGGGCGTTTGGAGCGTGCTGATCCTGT
TGAGTATCACCGTCGATGCC

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MKPIMLITGASAGIGAACATIAATRGFDLALNYRSDDAGAEAVAQSCRAAGAEVLLCKGDVSDPAAIDAIYASIDASYGR
LDALINNAGVVDQTAKVTDMSHERLRRMFDINVIGAILVAKAAVQRMQAQGDGGVIVNISSAAARLGSGNQYVDYAASKA
AIDTFTKGLSDEVAADNIRVMAIRPGLIETELHAKGGEPGRADKLAHMVPMKRKGSAEEVAQAILWLCSDEASYVTGSTL
DVTGGR

Sequences:

>Translated_246_residues
MKPIMLITGASAGIGAACATIAATRGFDLALNYRSDDAGAEAVAQSCRAAGAEVLLCKGDVSDPAAIDAIYASIDASYGR
LDALINNAGVVDQTAKVTDMSHERLRRMFDINVIGAILVAKAAVQRMQAQGDGGVIVNISSAAARLGSGNQYVDYAASKA
AIDTFTKGLSDEVAADNIRVMAIRPGLIETELHAKGGEPGRADKLAHMVPMKRKGSAEEVAQAILWLCSDEASYVTGSTL
DVTGGR
>Mature_246_residues
MKPIMLITGASAGIGAACATIAATRGFDLALNYRSDDAGAEAVAQSCRAAGAEVLLCKGDVSDPAAIDAIYASIDASYGR
LDALINNAGVVDQTAKVTDMSHERLRRMFDINVIGAILVAKAAVQRMQAQGDGGVIVNISSAAARLGSGNQYVDYAASKA
AIDTFTKGLSDEVAADNIRVMAIRPGLIETELHAKGGEPGRADKLAHMVPMKRKGSAEEVAQAILWLCSDEASYVTGSTL
DVTGGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=31.4285714285714, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI15277342, Length=250, Percent_Identity=30, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI32483357, Length=243, Percent_Identity=30.8641975308642, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=32, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI10190704, Length=244, Percent_Identity=31.9672131147541, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI59889578, Length=217, Percent_Identity=32.7188940092166, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI109715829, Length=244, Percent_Identity=29.5081967213115, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI66933014, Length=193, Percent_Identity=32.6424870466321, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI19923817, Length=253, Percent_Identity=25.6916996047431, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI31542939, Length=197, Percent_Identity=30.9644670050761, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI20149619, Length=194, Percent_Identity=30.9278350515464, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI126723750, Length=246, Percent_Identity=28.4552845528455, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI142976729, Length=190, Percent_Identity=31.5789473684211, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI7706318, Length=199, Percent_Identity=27.6381909547739, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI224922801, Length=172, Percent_Identity=31.3953488372093, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI4503301, Length=239, Percent_Identity=27.6150627615063, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI4758504, Length=252, Percent_Identity=29.7619047619048, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=49.3877551020408, Blast_Score=235, Evalue=2e-63,
Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=37.4485596707819, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=32.9268292682927, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1789378, Length=243, Percent_Identity=32.0987654320988, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI87082100, Length=247, Percent_Identity=35.2226720647773, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787905, Length=243, Percent_Identity=30.0411522633745, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1790717, Length=242, Percent_Identity=29.7520661157025, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI87082160, Length=241, Percent_Identity=29.8755186721992, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=28.7449392712551, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI2367365, Length=240, Percent_Identity=30.8333333333333, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786812, Length=258, Percent_Identity=29.0697674418605, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1787526, Length=250, Percent_Identity=27.2, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789057, Length=260, Percent_Identity=26.1538461538462, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787820, Length=243, Percent_Identity=27.9835390946502, Blast_Score=72, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=241, Percent_Identity=34.4398340248963, Blast_Score=123, Evalue=9e-29,
Organism=Caenorhabditis elegans, GI71994600, Length=256, Percent_Identity=34.765625, Blast_Score=123, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI115534694, Length=243, Percent_Identity=32.9218106995885, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=33.201581027668, Blast_Score=111, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI25147288, Length=243, Percent_Identity=30.8641975308642, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17559104, Length=257, Percent_Identity=31.5175097276265, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17560150, Length=255, Percent_Identity=29.8039215686275, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=29.3893129770992, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=28.7449392712551, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17538182, Length=252, Percent_Identity=30.1587301587302, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17536025, Length=255, Percent_Identity=28.2352941176471, Blast_Score=90, Evalue=8e-19,
Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=28.0898876404494, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17563726, Length=255, Percent_Identity=28.6274509803922, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17562990, Length=255, Percent_Identity=28.6274509803922, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI72000259, Length=257, Percent_Identity=29.9610894941634, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17536651, Length=247, Percent_Identity=27.1255060728745, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=27.710843373494, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=28.0769230769231, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17565030, Length=262, Percent_Identity=29.0076335877863, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=28.030303030303, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17538486, Length=259, Percent_Identity=28.957528957529, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=259, Percent_Identity=29.3436293436293, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=260, Percent_Identity=26.5384615384615, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17538480, Length=257, Percent_Identity=26.0700389105058, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=259, Percent_Identity=27.4131274131274, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17561272, Length=247, Percent_Identity=30.7692307692308, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=26.615969581749, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=205, Percent_Identity=30.7317073170732, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=258, Percent_Identity=27.5193798449612, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=248, Percent_Identity=31.0483870967742, Blast_Score=85, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6322227, Length=199, Percent_Identity=27.6381909547739, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=253, Percent_Identity=24.901185770751, Blast_Score=65, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=214, Percent_Identity=27.5700934579439, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322226, Length=194, Percent_Identity=22.680412371134, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=36.144578313253, Blast_Score=125, Evalue=2e-29,
Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=35.3413654618474, Blast_Score=124, Evalue=5e-29,
Organism=Drosophila melanogaster, GI28571526, Length=249, Percent_Identity=35.3413654618474, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI21357041, Length=251, Percent_Identity=34.2629482071713, Blast_Score=120, Evalue=7e-28,
Organism=Drosophila melanogaster, GI24639444, Length=245, Percent_Identity=30.6122448979592, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24644337, Length=254, Percent_Identity=36.2204724409449, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24643142, Length=252, Percent_Identity=28.1746031746032, Blast_Score=91, Evalue=6e-19,
Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=28.6290322580645, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI116007236, Length=239, Percent_Identity=29.7071129707113, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI281364494, Length=202, Percent_Identity=29.2079207920792, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24641388, Length=239, Percent_Identity=30.5439330543933, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI161076933, Length=191, Percent_Identity=27.2251308900524, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24584748, Length=191, Percent_Identity=27.2251308900524, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI17737361, Length=232, Percent_Identity=29.3103448275862, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28571387, Length=251, Percent_Identity=28.2868525896414, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648693, Length=227, Percent_Identity=27.3127753303965, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21355889, Length=227, Percent_Identity=27.3127753303965, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24641232, Length=231, Percent_Identity=23.8095238095238, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21358495, Length=238, Percent_Identity=29.4117647058824, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25444; Mature: 25444

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPIMLITGASAGIGAACATIAATRGFDLALNYRSDDAGAEAVAQSCRAAGAEVLLCKGD
CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECC
VSDPAAIDAIYASIDASYGRLDALINNAGVVDQTAKVTDMSHERLRRMFDINVIGAILVA
CCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHH
KAAVQRMQAQGDGGVIVNISSAAARLGSGNQYVDYAASKAAIDTFTKGLSDEVAADNIRV
HHHHHHHHCCCCCCEEEEECHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCEEE
MAIRPGLIETELHAKGGEPGRADKLAHMVPMKRKGSAEEVAQAILWLCSDEASYVTGSTL
EEECCCCEEEEHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEECCCEE
DVTGGR
EECCCC
>Mature Secondary Structure
MKPIMLITGASAGIGAACATIAATRGFDLALNYRSDDAGAEAVAQSCRAAGAEVLLCKGD
CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECC
VSDPAAIDAIYASIDASYGRLDALINNAGVVDQTAKVTDMSHERLRRMFDINVIGAILVA
CCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHH
KAAVQRMQAQGDGGVIVNISSAAARLGSGNQYVDYAASKAAIDTFTKGLSDEVAADNIRV
HHHHHHHHCCCCCCEEEEECHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCEEE
MAIRPGLIETELHAKGGEPGRADKLAHMVPMKRKGSAEEVAQAILWLCSDEASYVTGSTL
EEECCCCEEEEHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEECCCEE
DVTGGR
EECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 7764507 [H]