| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is fabG [H]
Identifier: 110680499
GI number: 110680499
Start: 3186971
End: 3187729
Strand: Direct
Name: fabG [H]
Synonym: RD1_3321
Alternate gene names: 110680499
Gene position: 3186971-3187729 (Clockwise)
Preceding gene: 110680494
Following gene: 110680502
Centisome position: 77.11
GC content: 63.5
Gene sequence:
>759_bases ATGACTCTGGCGAACGCACATGCACTTGTGACCGGTGGCGGCACCGGCATCGGGCTTGCCATCGCAAAAGACCTCGCCGC CGCGGGCGCACAAGTGACGATTACAGGACGCCGCCAGGAAGTGCTGGATGCGGTTGCGGCGCAAACTCCGGGCCTGCATG GCATGGCGATGGATGTGCGCGCGCAGGCAGATGTGATTGCCACCACCGAACGCGCCGTCGCCGCACGGGGCCCAATTCAG ATCTGCATCGCCAATGCCGGTATCGCCGAGGGCCGCGCCCTGCACAAAACCGATCTGGATTTCTGGCGCAACATGATGGC GACAAACCTTGACGGCACCTTTCTGACCATCCGCGAAGCGCTCAAAACCATGCGCGGCGCACCGTGGGGCCGCGTGATTG CCGTGTCCTCGATCGCCGGGCTGCGCGGCTTGCAGGGCGCGTCGTGCTATACCGCGTCAAAACATGGCATGATCGGCCTG ATCCGGGGTCTGAGCGAGGATTATCTGGGCAAGCCCATCACCTTTAATGCGTTGTGTCCAGCCTATGTGGACACGGAAAT TATCACGCGCAACACGGACTCCATCGCGGCCCGCGCCGGTGTCAGCACGCAAGAGGCGCGCGACATCATGGTCTCTGCCA ACCGTCACAACCGCCTGATCGCCCCGGAGGAAGTCTCGGCCGCCGCGATGTGGCTCGTTTCCGAGGCCGCCGCGAGTGTC AACGGACAGGCCATCGAAATCGCAGGCGGTCAGATGTAG
Upstream 100 bases:
>100_bases ACAGTAAATTCCCGCGTTGTCACGCATTTGGGATCAGACCTGCCGCTTGCGCTGCACGAAGACCACTCTAAGCTGCGGCC AACCAAAGGGAGGGACATGC
Downstream 100 bases:
>100_bases CTTTATTTTTTTCAAACACCCACGCCTGTCTGAGACGTGCCGACTTAAAAACCGCTGCTCAAAGAAAGACCCGGGAAAGC ACGGCAAGTGCCGAAAAAGC
Product: oxidoreductase, putative
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 252; Mature: 251
Protein sequence:
>252_residues MTLANAHALVTGGGTGIGLAIAKDLAAAGAQVTITGRRQEVLDAVAAQTPGLHGMAMDVRAQADVIATTERAVAARGPIQ ICIANAGIAEGRALHKTDLDFWRNMMATNLDGTFLTIREALKTMRGAPWGRVIAVSSIAGLRGLQGASCYTASKHGMIGL IRGLSEDYLGKPITFNALCPAYVDTEIITRNTDSIAARAGVSTQEARDIMVSANRHNRLIAPEEVSAAAMWLVSEAAASV NGQAIEIAGGQM
Sequences:
>Translated_252_residues MTLANAHALVTGGGTGIGLAIAKDLAAAGAQVTITGRRQEVLDAVAAQTPGLHGMAMDVRAQADVIATTERAVAARGPIQ ICIANAGIAEGRALHKTDLDFWRNMMATNLDGTFLTIREALKTMRGAPWGRVIAVSSIAGLRGLQGASCYTASKHGMIGL IRGLSEDYLGKPITFNALCPAYVDTEIITRNTDSIAARAGVSTQEARDIMVSANRHNRLIAPEEVSAAAMWLVSEAAASV NGQAIEIAGGQM >Mature_251_residues TLANAHALVTGGGTGIGLAIAKDLAAAGAQVTITGRRQEVLDAVAAQTPGLHGMAMDVRAQADVIATTERAVAARGPIQI CIANAGIAEGRALHKTDLDFWRNMMATNLDGTFLTIREALKTMRGAPWGRVIAVSSIAGLRGLQGASCYTASKHGMIGLI RGLSEDYLGKPITFNALCPAYVDTEIITRNTDSIAARAGVSTQEARDIMVSANRHNRLIAPEEVSAAAMWLVSEAAASVN GQAIEIAGGQM
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=179, Percent_Identity=33.5195530726257, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI32483357, Length=254, Percent_Identity=29.1338582677165, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI5031737, Length=256, Percent_Identity=27.734375, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI15277342, Length=267, Percent_Identity=29.9625468164794, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI66933014, Length=231, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI31542939, Length=250, Percent_Identity=27.2, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=30.9278350515464, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI109715829, Length=242, Percent_Identity=25.6198347107438, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI19923817, Length=253, Percent_Identity=25.6916996047431, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI4503817, Length=176, Percent_Identity=29.5454545454545, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI126723750, Length=257, Percent_Identity=27.2373540856031, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI20149619, Length=209, Percent_Identity=26.3157894736842, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI4504505, Length=255, Percent_Identity=27.0588235294118, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI7706318, Length=195, Percent_Identity=25.6410256410256, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI7705925, Length=252, Percent_Identity=25.3968253968254, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI142976729, Length=194, Percent_Identity=25.2577319587629, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1787335, Length=254, Percent_Identity=30.7086614173228, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI87082160, Length=263, Percent_Identity=28.5171102661597, Blast_Score=87, Evalue=8e-19, Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=29.8039215686275, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1790717, Length=257, Percent_Identity=26.8482490272374, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789208, Length=258, Percent_Identity=28.6821705426357, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1788459, Length=252, Percent_Identity=26.984126984127, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI2367175, Length=257, Percent_Identity=30.3501945525292, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=27.4131274131274, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI2367365, Length=245, Percent_Identity=28.1632653061224, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787820, Length=242, Percent_Identity=28.5123966942149, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=29.9212598425197, Blast_Score=101, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17560676, Length=254, Percent_Identity=27.9527559055118, Blast_Score=91, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17538182, Length=202, Percent_Identity=32.1782178217822, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17564282, Length=184, Percent_Identity=29.8913043478261, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=26.1044176706827, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193203117, Length=183, Percent_Identity=27.3224043715847, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI193203115, Length=184, Percent_Identity=27.1739130434783, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI115534694, Length=253, Percent_Identity=25.6916996047431, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17568967, Length=186, Percent_Identity=31.1827956989247, Blast_Score=67, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6322861, Length=185, Percent_Identity=27.5675675675676, Blast_Score=65, Evalue=9e-12, Organism=Drosophila melanogaster, GI21355319, Length=256, Percent_Identity=30.859375, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24644339, Length=265, Percent_Identity=27.5471698113208, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI23397609, Length=256, Percent_Identity=30.078125, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI24639444, Length=255, Percent_Identity=29.8039215686275, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI21357041, Length=256, Percent_Identity=27.734375, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24641232, Length=206, Percent_Identity=29.126213592233, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI221331218, Length=204, Percent_Identity=31.8627450980392, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24665243, Length=204, Percent_Identity=31.8627450980392, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI18859837, Length=163, Percent_Identity=33.7423312883436, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI28571526, Length=255, Percent_Identity=27.0588235294118, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24648944, Length=215, Percent_Identity=26.9767441860465, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI221331216, Length=205, Percent_Identity=31.7073170731707, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI116007236, Length=200, Percent_Identity=30, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24643142, Length=251, Percent_Identity=28.6852589641434, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI24665247, Length=205, Percent_Identity=31.7073170731707, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24641388, Length=201, Percent_Identity=29.8507462686567, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21356301, Length=165, Percent_Identity=27.8787878787879, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI28571387, Length=219, Percent_Identity=28.7671232876712, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 26205; Mature: 26074
Theoretical pI: Translated: 7.56; Mature: 7.56
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLANAHALVTGGGTGIGLAIAKDLAAAGAQVTITGRRQEVLDAVAAQTPGLHGMAMDVR CCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCCEEEEEC AQADVIATTERAVAARGPIQICIANAGIAEGRALHKTDLDFWRNMMATNLDGTFLTIREA CCCCEEEECHHHHHCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHH LKTMRGAPWGRVIAVSSIAGLRGLQGASCYTASKHGMIGLIRGLSEDYLGKPITFNALCP HHHHHCCCCCCEEEEEHHHHHCCCCCCCEEECCCCCHHHHHHCCCHHHCCCCEEECCCCC AYVDTEIITRNTDSIAARAGVSTQEARDIMVSANRHNRLIAPEEVSAAAMWLVSEAAASV HHHCCEEEECCCCHHHHHCCCCHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC NGQAIEIAGGQM CCCEEEECCCCC >Mature Secondary Structure TLANAHALVTGGGTGIGLAIAKDLAAAGAQVTITGRRQEVLDAVAAQTPGLHGMAMDVR CCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCCEEEEEC AQADVIATTERAVAARGPIQICIANAGIAEGRALHKTDLDFWRNMMATNLDGTFLTIREA CCCCEEEECHHHHHCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHH LKTMRGAPWGRVIAVSSIAGLRGLQGASCYTASKHGMIGLIRGLSEDYLGKPITFNALCP HHHHHCCCCCCEEEEEHHHHHCCCCCCCEEECCCCCHHHHHHCCCHHHCCCCEEECCCCC AYVDTEIITRNTDSIAARAGVSTQEARDIMVSANRHNRLIAPEEVSAAAMWLVSEAAASV HHHCCEEEECCCCHHHHHCCCCHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCC NGQAIEIAGGQM CCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]