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The map label for this gene is lpcC [H]

Identifier: 110680489

GI number: 110680489

Start: 3171302

End: 3172372

Strand: Direct

Name: lpcC [H]

Synonym: RD1_3309

Alternate gene names: 110680489

Gene position: 3171302-3172372 (Clockwise)

Preceding gene: 110680488

Following gene: 110680492

Centisome position: 76.73

GC content: 60.78

Gene sequence:

>1071_bases
ATGTCCCCTGCCCAGATCCCCGCCCTTCGAGAGATCGAGGTGATTGCGCCCAATTTCAAACGGCGGCATTCCGGCGTCAC
ATCGACCGTCATCCGTCTTGTGCCGTTGCAGGCGCGCGACATCGCGATTGTGGCTTCGGGCCCTGACCTGCCCGGCGAAG
TGCCCAACCTGCCCCCCCGTGGATTGCTGCGCCTGCCCCGCTCCGGCCCCTCTGGCGCGCGCGTCTGGCATGCCCGGCGC
AATGTGGAAATGGTCGCCGGGCTGGCGCTGAAATATCTTGCGGGGAAACGGTTGAAACTGCTTTTCACCTCCGCCGCGCA
GCGCCGGCATACGGGCTTTACCCGCTGGCTCATTCGCCAGATGGATGCGGTCATCGCCACATCCGCGAAATCGGCGGGCT
ACTTGGAACGCGACGCAACTGTCATACACCACGGTATCGACACCGTGCTTTTCAGCCCTGTCGAGAACCGGGAGGCTCTG
CGCGCCACACTTGATTTGCCAGTGGATGGCCCTTTGGTCGGCTGTTTCGGGCGCATTCGCCATCAGAAAGGCAACGATCT
TTTTATCAAAGCGATGATCAGCATCTTTTCTGAGGTGCCCCACGGCAGGGCGCTGATGATGGGTCGCGCGACCGAAGAGC
ATAAAACCTATCTGCAGGAGCTCAAGGATGAGGTCGCAGCCGCCGGGTTGTCAGACCGCATCCTGTTTCGCGATGAGGTG
CCAATCGACCAACTGTCGCTGCATTTTCAGGCGCTTGACTTATACATTGCACCGCAGCGTTGGGAGGGCTTTGGCCTGAC
ACCGCTGGAGGCCATGGCGTGCGGCGCGCCCGTGGTCGCCACACGCGTCGGCGCGTTTGAAGAGCTGATCGAGGACGGCG
TGACCGGTAATCTGGTCGAGGTTGATGATGTTGACGCGATCACAGCCAACTTGCGGCGACTGCTGGTCGATGAAGAGATG
CGCGCCAGTTTTGCCACGGCCGCACGTGAAAACGTGGTCAAGAATTTTTCAATCGAGAAGGAAGCCGCGTCCATTCTCCA
CATCTACCATGGTCTGCTCGGGCGCGCTTGA

Upstream 100 bases:

>100_bases
GCCGGGCCGCGCGCGATTATGTGCGCGGCAAGTCATCCCAGACCAGCACGATTGCCACGCGGCTGATCCGTGCGCTGGAT
TTGCAAGGTGAGGTCCGCTG

Downstream 100 bases:

>100_bases
CGCAAGGCAGTTGGCCCTTGCACCTGACGACATACCGTCATGAATTCTTGGAATCCGGGGCAGCGGTGTGGACGGGTCAG
GATTTCACATGACGCTTCAG

Product: lipopolysaccharide core biosynthesis mannosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MSPAQIPALREIEVIAPNFKRRHSGVTSTVIRLVPLQARDIAIVASGPDLPGEVPNLPPRGLLRLPRSGPSGARVWHARR
NVEMVAGLALKYLAGKRLKLLFTSAAQRRHTGFTRWLIRQMDAVIATSAKSAGYLERDATVIHHGIDTVLFSPVENREAL
RATLDLPVDGPLVGCFGRIRHQKGNDLFIKAMISIFSEVPHGRALMMGRATEEHKTYLQELKDEVAAAGLSDRILFRDEV
PIDQLSLHFQALDLYIAPQRWEGFGLTPLEAMACGAPVVATRVGAFEELIEDGVTGNLVEVDDVDAITANLRRLLVDEEM
RASFATAARENVVKNFSIEKEAASILHIYHGLLGRA

Sequences:

>Translated_356_residues
MSPAQIPALREIEVIAPNFKRRHSGVTSTVIRLVPLQARDIAIVASGPDLPGEVPNLPPRGLLRLPRSGPSGARVWHARR
NVEMVAGLALKYLAGKRLKLLFTSAAQRRHTGFTRWLIRQMDAVIATSAKSAGYLERDATVIHHGIDTVLFSPVENREAL
RATLDLPVDGPLVGCFGRIRHQKGNDLFIKAMISIFSEVPHGRALMMGRATEEHKTYLQELKDEVAAAGLSDRILFRDEV
PIDQLSLHFQALDLYIAPQRWEGFGLTPLEAMACGAPVVATRVGAFEELIEDGVTGNLVEVDDVDAITANLRRLLVDEEM
RASFATAARENVVKNFSIEKEAASILHIYHGLLGRA
>Mature_355_residues
SPAQIPALREIEVIAPNFKRRHSGVTSTVIRLVPLQARDIAIVASGPDLPGEVPNLPPRGLLRLPRSGPSGARVWHARRN
VEMVAGLALKYLAGKRLKLLFTSAAQRRHTGFTRWLIRQMDAVIATSAKSAGYLERDATVIHHGIDTVLFSPVENREALR
ATLDLPVDGPLVGCFGRIRHQKGNDLFIKAMISIFSEVPHGRALMMGRATEEHKTYLQELKDEVAAAGLSDRILFRDEVP
IDQLSLHFQALDLYIAPQRWEGFGLTPLEAMACGAPVVATRVGAFEELIEDGVTGNLVEVDDVDAITANLRRLLVDEEMR
ASFATAARENVVKNFSIEKEAASILHIYHGLLGRA

Specific function: Acts at transfer of mannose group to a 3-deoxy-D-mono octulonic acid (KDO) via an alpha-1,5 linkage [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 39146; Mature: 39015

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPAQIPALREIEVIAPNFKRRHSGVTSTVIRLVPLQARDIAIVASGPDLPGEVPNLPPR
CCCCCCCCCCEEEEECCCHHHHHCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCC
GLLRLPRSGPSGARVWHARRNVEMVAGLALKYLAGKRLKLLFTSAAQRRHTGFTRWLIRQ
HHEECCCCCCCCCEEEHHHCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHH
MDAVIATSAKSAGYLERDATVIHHGIDTVLFSPVENREALRATLDLPVDGPLVGCFGRIR
HHHHHHHCCCCCCCCCCCCHHHHHCHHHHEECCCCCHHHHHHEECCCCCCCHHHHHHHHH
HQKGNDLFIKAMISIFSEVPHGRALMMGRATEEHKTYLQELKDEVAAAGLSDRILFRDEV
CCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCC
PIDQLSLHFQALDLYIAPQRWEGFGLTPLEAMACGAPVVATRVGAFEELIEDGVTGNLVE
CHHHHHHHEEEEEEEECCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEE
VDDVDAITANLRRLLVDEEMRASFATAARENVVKNFSIEKEAASILHIYHGLLGRA
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SPAQIPALREIEVIAPNFKRRHSGVTSTVIRLVPLQARDIAIVASGPDLPGEVPNLPPR
CCCCCCCCCEEEEECCCHHHHHCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCC
GLLRLPRSGPSGARVWHARRNVEMVAGLALKYLAGKRLKLLFTSAAQRRHTGFTRWLIRQ
HHEECCCCCCCCCEEEHHHCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHH
MDAVIATSAKSAGYLERDATVIHHGIDTVLFSPVENREALRATLDLPVDGPLVGCFGRIR
HHHHHHHCCCCCCCCCCCCHHHHHCHHHHEECCCCCHHHHHHEECCCCCCCHHHHHHHHH
HQKGNDLFIKAMISIFSEVPHGRALMMGRATEEHKTYLQELKDEVAAAGLSDRILFRDEV
CCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCC
PIDQLSLHFQALDLYIAPQRWEGFGLTPLEAMACGAPVVATRVGAFEELIEDGVTGNLVE
CHHHHHHHEEEEEEEECCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEE
VDDVDAITANLRRLLVDEEMRASFATAARENVVKNFSIEKEAASILHIYHGLLGRA
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]