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The map label for this gene is ydiU [C]

Identifier: 110680323

GI number: 110680323

Start: 3011937

End: 3013349

Strand: Direct

Name: ydiU [C]

Synonym: RD1_3136

Alternate gene names: 110680323

Gene position: 3011937-3013349 (Clockwise)

Preceding gene: 110680322

Following gene: 110680326

Centisome position: 72.87

GC content: 62.0

Gene sequence:

>1413_bases
ATGACAATTACCGCCCCCTTTGATAACAGCTATGCGCGGCTGCCGGCTGTGTTCTACACGCGCCTCAAGCCGACGCCCGT
ACGCGACCCGTCGCTGATTGCATATAATGAACCGCTAGGGGATATCTTGGGTATCTCCGCAGCGGATGCGGCCGAACGCG
CCGCCGTCTTTTCGGGTGCGAAACTGCCCGAGGGCGCGGCACCCTTGGCACAGCTTTATGCGGGGCATCAGTTCGGCAAT
TTCAATCCGCAACTGGGCGATGGCCGGGCCATTCTGCTGGGCGAGGTCATCGGCACGGACGGCAAGCGCTATGACGTGCA
ACTGAAAGGGTCCGGCCCCACGCCCTATTCGCGCATGGGCGACGGGCGCGCATGGCTCGGTCCGGTGCTGCGAGAATACG
TTGTGTCCGAGGCGATGCATGCGCTTGGCGTACCCACCACGCGCGCGCTGGCGGCAACGCTGACGGGTGAAGACGTCCTG
CGCGAAACGGTTCTGCCCGGCGCGGTGCTGACGCGCGTGGCCGCCAGCCACCTGCGGGTTGGTACCTTTCAGATCTTTGC
CCACCGGCGGCAGATTGATGCGCTGAAAGAACTGACAGATTACGCGATCGCGCGCCACGCACCGGATGCGGACGGACCGC
TCGGACTCTTGCGCGCGGTCTGTGCCGCGCAGGCTGAACTCGTGGCCGGCTGGATGTCGCTCGGCTTTATTCACGGCGTG
ATGAATACCGACAACAGCGCAATATCGGGGGAGACCATCGACTATGGCCCCTGCGCCTTTATGGATGTCTATCATCCCGA
CACGGTGTTCAGTTCTATTGATCAGACCGGGCGCTATGCCTATTCCAACCAACCGCGGATCGCGGTATGGAACATGGCGC
AGCTGGCAACCGCCCTTTTGCAGCAGATGGACGACCCGGAAGCAGCCGTTGAAGAAGCCACGCAGATCGTGCACGCCATG
CCCACGCAGATCGAGGCCGCATGGCTGGATCGCATGGGCAAAAAGATCGGCATAGCCAAGGCCACGCCCGAAGACACCCC
CCTGATCGAGGGTCTGTTGAAGCTCATGCAGGAGCAAAAGGCCGATTTCACCAATACATTCGATGCGCTGGCGCGGTCTG
ACGCGCGCGATCAGTTTCTGGATCGGGATGCCTTTGACGAATGGTGCGCGCAGTGGCGCGCGCGCCTTTCAACGCAAAGC
AACCCAAGCGCTGTGATGCAGGCCGCATCGCCCCGCGTCATCCCGCGCAACCATCGGGTCGAAGAGATGATTGCCGCTGC
CGTGCAGGGTGATTACGCGCCTTTTGAACGCCTGCTGAAGGCTTGCACAGACCCGTTCAACACCGATGACACGGACCTGA
TGCGGCCGCCGACCAAGGACGAAATCGTACCCGCCACTTTCTGTGGCACCTAA

Upstream 100 bases:

>100_bases
AGCGCGCCGGGTTCAAACCGCGCGAGAATTACATGCTGATGACCAAAACCTTCTGACCGGGCGGGTGGCACAGGCGCACA
AAGCCGCTTATATGCCAGTC

Downstream 100 bases:

>100_bases
GCTGCGCGCGGTTTTCGGTTGATGAGATAGATGCCAAGCGAGACCAGAACCAAAGCTGCCCAGACCTGAAGCCCGACGTC
TTCATTCAGCAAAAGCCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MTITAPFDNSYARLPAVFYTRLKPTPVRDPSLIAYNEPLGDILGISAADAAERAAVFSGAKLPEGAAPLAQLYAGHQFGN
FNPQLGDGRAILLGEVIGTDGKRYDVQLKGSGPTPYSRMGDGRAWLGPVLREYVVSEAMHALGVPTTRALAATLTGEDVL
RETVLPGAVLTRVAASHLRVGTFQIFAHRRQIDALKELTDYAIARHAPDADGPLGLLRAVCAAQAELVAGWMSLGFIHGV
MNTDNSAISGETIDYGPCAFMDVYHPDTVFSSIDQTGRYAYSNQPRIAVWNMAQLATALLQQMDDPEAAVEEATQIVHAM
PTQIEAAWLDRMGKKIGIAKATPEDTPLIEGLLKLMQEQKADFTNTFDALARSDARDQFLDRDAFDEWCAQWRARLSTQS
NPSAVMQAASPRVIPRNHRVEEMIAAAVQGDYAPFERLLKACTDPFNTDDTDLMRPPTKDEIVPATFCGT

Sequences:

>Translated_470_residues
MTITAPFDNSYARLPAVFYTRLKPTPVRDPSLIAYNEPLGDILGISAADAAERAAVFSGAKLPEGAAPLAQLYAGHQFGN
FNPQLGDGRAILLGEVIGTDGKRYDVQLKGSGPTPYSRMGDGRAWLGPVLREYVVSEAMHALGVPTTRALAATLTGEDVL
RETVLPGAVLTRVAASHLRVGTFQIFAHRRQIDALKELTDYAIARHAPDADGPLGLLRAVCAAQAELVAGWMSLGFIHGV
MNTDNSAISGETIDYGPCAFMDVYHPDTVFSSIDQTGRYAYSNQPRIAVWNMAQLATALLQQMDDPEAAVEEATQIVHAM
PTQIEAAWLDRMGKKIGIAKATPEDTPLIEGLLKLMQEQKADFTNTFDALARSDARDQFLDRDAFDEWCAQWRARLSTQS
NPSAVMQAASPRVIPRNHRVEEMIAAAVQGDYAPFERLLKACTDPFNTDDTDLMRPPTKDEIVPATFCGT
>Mature_469_residues
TITAPFDNSYARLPAVFYTRLKPTPVRDPSLIAYNEPLGDILGISAADAAERAAVFSGAKLPEGAAPLAQLYAGHQFGNF
NPQLGDGRAILLGEVIGTDGKRYDVQLKGSGPTPYSRMGDGRAWLGPVLREYVVSEAMHALGVPTTRALAATLTGEDVLR
ETVLPGAVLTRVAASHLRVGTFQIFAHRRQIDALKELTDYAIARHAPDADGPLGLLRAVCAAQAELVAGWMSLGFIHGVM
NTDNSAISGETIDYGPCAFMDVYHPDTVFSSIDQTGRYAYSNQPRIAVWNMAQLATALLQQMDDPEAAVEEATQIVHAMP
TQIEAAWLDRMGKKIGIAKATPEDTPLIEGLLKLMQEQKADFTNTFDALARSDARDQFLDRDAFDEWCAQWRARLSTQSN
PSAVMQAASPRVIPRNHRVEEMIAAAVQGDYAPFERLLKACTDPFNTDDTDLMRPPTKDEIVPATFCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=391, Percent_Identity=41.4322250639386, Blast_Score=266, Evalue=2e-71,
Organism=Escherichia coli, GI1787999, Length=456, Percent_Identity=42.5438596491228, Blast_Score=349, Evalue=2e-97,
Organism=Saccharomyces cerevisiae, GI6325034, Length=406, Percent_Identity=29.5566502463054, Blast_Score=181, Evalue=3e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3136_ROSDO (Q164E9)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_683330.1
- STRING:   Q164E9
- GeneID:   4198642
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_3136
- NMPDR:   fig|375451.6.peg.2911
- eggNOG:   COG0397
- HOGENOM:   HBG683993
- OMA:   RRDIQLK
- PhylomeDB:   Q164E9
- ProtClustDB:   CLSK767342
- BioCyc:   RDEN375451:RD1_3136-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 51091; Mature: 50960

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITAPFDNSYARLPAVFYTRLKPTPVRDPSLIAYNEPLGDILGISAADAAERAAVFSGA
CEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHCCCHHHHHHHHHHHCCC
KLPEGAAPLAQLYAGHQFGNFNPQLGDGRAILLGEVIGTDGKRYDVQLKGSGPTPYSRMG
CCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHCCCCCEEEEEEECCCCCCHHHCC
DGRAWLGPVLREYVVSEAMHALGVPTTRALAATLTGEDVLRETVLPGAVLTRVAASHLRV
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHH
GTFQIFAHRRQIDALKELTDYAIARHAPDADGPLGLLRAVCAAQAELVAGWMSLGFIHGV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MNTDNSAISGETIDYGPCAFMDVYHPDTVFSSIDQTGRYAYSNQPRIAVWNMAQLATALL
HCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCEEECCCCCEEEECHHHHHHHHH
QQMDDPEAAVEEATQIVHAMPTQIEAAWLDRMGKKIGIAKATPEDTPLIEGLLKLMQEQK
HHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
ADFTNTFDALARSDARDQFLDRDAFDEWCAQWRARLSTQSNPSAVMQAASPRVIPRNHRV
CCHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHH
EEMIAAAVQGDYAPFERLLKACTDPFNTDDTDLMRPPTKDEIVPATFCGT
HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TITAPFDNSYARLPAVFYTRLKPTPVRDPSLIAYNEPLGDILGISAADAAERAAVFSGA
EEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHCCCHHHHHHHHHHHCCC
KLPEGAAPLAQLYAGHQFGNFNPQLGDGRAILLGEVIGTDGKRYDVQLKGSGPTPYSRMG
CCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHCCCCCEEEEEEECCCCCCHHHCC
DGRAWLGPVLREYVVSEAMHALGVPTTRALAATLTGEDVLRETVLPGAVLTRVAASHLRV
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHH
GTFQIFAHRRQIDALKELTDYAIARHAPDADGPLGLLRAVCAAQAELVAGWMSLGFIHGV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MNTDNSAISGETIDYGPCAFMDVYHPDTVFSSIDQTGRYAYSNQPRIAVWNMAQLATALL
HCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCEEECCCCCEEEECHHHHHHHHH
QQMDDPEAAVEEATQIVHAMPTQIEAAWLDRMGKKIGIAKATPEDTPLIEGLLKLMQEQK
HHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
ADFTNTFDALARSDARDQFLDRDAFDEWCAQWRARLSTQSNPSAVMQAASPRVIPRNHRV
CCHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHH
EEMIAAAVQGDYAPFERLLKACTDPFNTDDTDLMRPPTKDEIVPATFCGT
HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA