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The map label for this gene is ychE [C]

Identifier: 110680302

GI number: 110680302

Start: 2992158

End: 2992790

Strand: Direct

Name: ychE [C]

Synonym: RD1_3115

Alternate gene names: 110680302

Gene position: 2992158-2992790 (Clockwise)

Preceding gene: 110680300

Following gene: 110680303

Centisome position: 72.4

GC content: 61.45

Gene sequence:

>633_bases
ATGATCGTTGATACGGCTTTTCTCATCACCGCTTTTGTCACCATGTTCGTAGTCATTGATCCCATTGGCCTTGCGCCTCT
GTTCGTTGCGCTGACACATGGCATGTCGGACGAGGCGCGGCGGCGCATTGCGCTGCGGGCGACGCTGATCGCGGTGATCA
TTCTGCTGGCCTTTGCCACCTTTGGGGAAGCGCTCCTGACCTTCATCGGCATCTCCATGCCCGCCTTCCGGGTTGCGGGC
GGGGTGTTGTTGTTCCTGACCGCGCTCGACATGTTGTTCGAGCGGCGCACCAAGCGACGCGAGGATCGCTCCGAAGAAGA
TGACAGCGATGACCCTTCCGTTTTCCCACTGGCGATTCCGCTGATCGCGGGGCCGGGTTCCATTGCTTCGGTCATCCTGT
TGATGGGCCAGCGCCCGGGGCTGGAAGGCGCGGTGATGGTCCTTGGGGCAACCGGCTTGGTGATGCTGATTGTGCTGGCA
TTTTTCCTGATCAGCGGCCCCGTCGGGCGCGCTTTGGGCAAAACGGGCATCACGGTTGTCACGCGACTGCTGGGCATGTT
GCTGGCGGCGTTGTCGGTTCAATTCGTGCTGGACGGGCTGGCAGCCTTTGGTTTTGCGCCCGGCATGGGCTGA

Upstream 100 bases:

>100_bases
CCTTTGATCCTCGAATTCCGGTTTCGCGTCGCATGTTTCTTTGCTTTTGCCGCACAACTCCCATAGATGTCCCGGCGACG
ACGCTTTCAGGACCCTCGCC

Downstream 100 bases:

>100_bases
CAATTCCGAATTGCACCATATATCTAACCCGTAAGTGATGGGAGAGTTTCAGTGGACAGTTTCGACACCGGGCAGCTTAT
CTACCTGATCCTGCTGGGCC

Product: MarC family integral membrane protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MIVDTAFLITAFVTMFVVIDPIGLAPLFVALTHGMSDEARRRIALRATLIAVIILLAFATFGEALLTFIGISMPAFRVAG
GVLLFLTALDMLFERRTKRREDRSEEDDSDDPSVFPLAIPLIAGPGSIASVILLMGQRPGLEGAVMVLGATGLVMLIVLA
FFLISGPVGRALGKTGITVVTRLLGMLLAALSVQFVLDGLAAFGFAPGMG

Sequences:

>Translated_210_residues
MIVDTAFLITAFVTMFVVIDPIGLAPLFVALTHGMSDEARRRIALRATLIAVIILLAFATFGEALLTFIGISMPAFRVAG
GVLLFLTALDMLFERRTKRREDRSEEDDSDDPSVFPLAIPLIAGPGSIASVILLMGQRPGLEGAVMVLGATGLVMLIVLA
FFLISGPVGRALGKTGITVVTRLLGMLLAALSVQFVLDGLAAFGFAPGMG
>Mature_210_residues
MIVDTAFLITAFVTMFVVIDPIGLAPLFVALTHGMSDEARRRIALRATLIAVIILLAFATFGEALLTFIGISMPAFRVAG
GVLLFLTALDMLFERRTKRREDRSEEDDSDDPSVFPLAIPLIAGPGSIASVILLMGQRPGLEGAVMVLGATGLVMLIVLA
FFLISGPVGRALGKTGITVVTRLLGMLLAALSVQFVLDGLAAFGFAPGMG

Specific function: Unknown

COG id: COG2095

COG function: function code U; Multiple antibiotic transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0056 (marC) family [H]

Homologues:

Organism=Escherichia coli, GI1787494, Length=201, Percent_Identity=31.8407960199005, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI1789842, Length=200, Percent_Identity=32.5, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787809, Length=194, Percent_Identity=29.3814432989691, Blast_Score=85, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002771 [H]

Pfam domain/function: PF01914 MarC [H]

EC number: NA

Molecular weight: Translated: 22134; Mature: 22134

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVDTAFLITAFVTMFVVIDPIGLAPLFVALTHGMSDEARRRIALRATLIAVIILLAFAT
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FGEALLTFIGISMPAFRVAGGVLLFLTALDMLFERRTKRREDRSEEDDSDDPSVFPLAIP
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHH
LIAGPGSIASVILLMGQRPGLEGAVMVLGATGLVMLIVLAFFLISGPVGRALGKTGITVV
HHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
TRLLGMLLAALSVQFVLDGLAAFGFAPGMG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIVDTAFLITAFVTMFVVIDPIGLAPLFVALTHGMSDEARRRIALRATLIAVIILLAFAT
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FGEALLTFIGISMPAFRVAGGVLLFLTALDMLFERRTKRREDRSEEDDSDDPSVFPLAIP
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHH
LIAGPGSIASVILLMGQRPGLEGAVMVLGATGLVMLIVLAFFLISGPVGRALGKTGITVV
HHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
TRLLGMLLAALSVQFVLDGLAAFGFAPGMG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]