| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is cheY [H]
Identifier: 110680253
GI number: 110680253
Start: 2931602
End: 2931988
Strand: Direct
Name: cheY [H]
Synonym: RD1_3062
Alternate gene names: 110680253
Gene position: 2931602-2931988 (Clockwise)
Preceding gene: 110680252
Following gene: 162139373
Centisome position: 70.93
GC content: 45.99
Gene sequence:
>387_bases ATGTCTCTAAGGGATCAGATTCGAATTTTGGTTGTGGATGATATGTCGACCAGTCGCGGGCTTATTACGCAAGCTTTGGA TGCTTTTGGCGTGCGAAACGTAACCACGGCCGAAAATGGTCGCGATGCCCTGAAGTCTATAACGACACATCCTGTCCACT TGGTCATATCTGATTACAACATGCCTGAAATGGACGGACTGCAGTTATTGCATCAACTGCGCGGCTCTCCAAAAACAAAA GGTGTGGGCTTCATACTTATTACAGGTCGCGCGGAACAACAAATCATCGATCACGGGAAAAAACTCGGGATGAACAATTA TCTTAAAAAACCTTTTGAACCAAGCGGTTTACGAAACTGTATCGAGGCAGTCGTCGGGAGACTGTAA
Upstream 100 bases:
>100_bases AGCGCATTTCAGACCCGGACTTAGCAGGTTTCGCGAACCAAGGCCCAACAACCTATCGACACAAAAAAGCACACGAAGAG TTAGCGCGTGAGGAAAACAA
Downstream 100 bases:
>100_bases ATGGAGTACACACCGCACCCAATAGAGGTATCAACAGTTTTACGAAGACTATGCAATCATCTGGATTTCTTGGCAGCCAG GGTTTTTGAAGTAGAAGAAG
Product: chemotaxis response regulator CheY
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 128; Mature: 127
Protein sequence:
>128_residues MSLRDQIRILVVDDMSTSRGLITQALDAFGVRNVTTAENGRDALKSITTHPVHLVISDYNMPEMDGLQLLHQLRGSPKTK GVGFILITGRAEQQIIDHGKKLGMNNYLKKPFEPSGLRNCIEAVVGRL
Sequences:
>Translated_128_residues MSLRDQIRILVVDDMSTSRGLITQALDAFGVRNVTTAENGRDALKSITTHPVHLVISDYNMPEMDGLQLLHQLRGSPKTK GVGFILITGRAEQQIIDHGKKLGMNNYLKKPFEPSGLRNCIEAVVGRL >Mature_127_residues SLRDQIRILVVDDMSTSRGLITQALDAFGVRNVTTAENGRDALKSITTHPVHLVISDYNMPEMDGLQLLHQLRGSPKTKG VGFILITGRAEQQIIDHGKKLGMNNYLKKPFEPSGLRNCIEAVVGRL
Specific function: Putative member of a two-component regulatory system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788191, Length=123, Percent_Identity=34.1463414634146, Blast_Score=85, Evalue=1e-18, Organism=Escherichia coli, GI1786599, Length=121, Percent_Identity=28.9256198347107, Blast_Score=60, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001789 [H]
Pfam domain/function: PF00072 Response_reg [H]
EC number: NA
Molecular weight: Translated: 14153; Mature: 14021
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLRDQIRILVVDDMSTSRGLITQALDAFGVRNVTTAENGRDALKSITTHPVHLVISDYN CCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCC MPEMDGLQLLHQLRGSPKTKGVGFILITGRAEQQIIDHGKKLGMNNYLKKPFEPSGLRNC CCCHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHCCCCCCHHHHHH IEAVVGRL HHHHHCCC >Mature Secondary Structure SLRDQIRILVVDDMSTSRGLITQALDAFGVRNVTTAENGRDALKSITTHPVHLVISDYN CCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEEECCC MPEMDGLQLLHQLRGSPKTKGVGFILITGRAEQQIIDHGKKLGMNNYLKKPFEPSGLRNC CCCHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHCCCCCCHHHHHH IEAVVGRL HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA