| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
Click here to switch to the map view.
The map label for this gene is metF
Identifier: 110680247
GI number: 110680247
Start: 2925059
End: 2926042
Strand: Direct
Name: metF
Synonym: RD1_3056
Alternate gene names: NA
Gene position: 2925059-2926042 (Clockwise)
Preceding gene: 110680246
Following gene: 110680248
Centisome position: 70.77
GC content: 58.74
Gene sequence:
>984_bases TTGGGCCTGAGCCTGCCACGCCTGATAGACACACTCTTGTCCCGAAAGGAACGCCTCGTGGCCTTGTTGAATTTCAAGCG CAAAGTTGCGCCAGCCTCGCCTTCCGTCAATCCGGATGTCGAGGCGTTTTTGCAGGATTACTCGATCGAAGTCATGCCGC GCACCGCCGAGAAAGTGGATGATTTCCGCGCCCTGCTGCCCGAAGGCACCCGCGTATATATCGCCCATATCGAAGGAACG CCCATTGAGGAGATGGTCGCAACCGCGAAACGTCTGAATGACGACGGGTTCGCAGTAATGCCACATTTCCCGGCCCGCAT CATCAGGGACCGCGCCACCCTCAAGGACTGGATTGCCCGGTATCAGGGCGAGGCGAATGTACATCAGGCGCTGCTGCTGG CAGGCGGTGTCGAGAAGCCGCTCGGGGACTTTGACAGCTCCATGCAGTTGATGGAAACGGGTCTGTTTGATGAGGCCGGG TTCAAACGCCTGCATGTTGCGGGCCACCCCGAGGGCAACCGCGATATTGACACCGATGGGTCGATGAAAAACGTATCCGC CGCGCTGCGCTGGAAAAACGATTTTCAATCCCGCACGGATGCGCAGTTGGCCATCGCGACGCAATTTGCCTTTGACGCCA AACCCATCATCGCATGGGCCGACACCATCGCCGCCGAAGGGATCACCCTGCCCGTTCACATTGGCATTGCCGGTCCGGCC AAGCTGCAAACGCTGATCAAGTTTGCGATTGCCTGCGGCGTTGGCCCCTCGCTGAAGGTGCTGCAGAAGCGCGCGATGGA TGTCACAAAACTCTTGCTGCCTTATGAGCCGACGGATGTCGTTGCGCAATTGGCCGCCCACAAGGCCGCGAATCCTGACT TCAACATCACGAACGTTCATTTCTTTCCACTCGGCGGGATCAAGACGAACGCCAACTGGGCCATCGAAAACGGCGGCTCC TCCGCAAAACCGGCAAACGCCTGA
Upstream 100 bases:
>100_bases AGATGCCGGGAACACCGGATGAAATCGCAGATGCAGAAGCTGCCCGACTAGATGCTGAATTTGACCGTGCGCGCCTCAAG GCGCTGATTGATAACGATGG
Downstream 100 bases:
>100_bases TCCAAGGACTTATTCCTGATGACAAAGACCATCGTCGAATCAAAAACCAAGACTGCGATCATCGGGTTCGATCAGCCCTT TTGCGTGATCGGGGAACGCA
Product: 5,10-methylenetetrahydrofolate reductase, putative
Products: NA
Alternate protein names: 5 10-Methylenetetrahydrofolate Reductase; Methylenetetrahydrofolate Reductase Family Protein; Metfprotein-Like; MetF-Like Protein; Metfprotein -Like Protein
Number of amino acids: Translated: 327; Mature: 326
Protein sequence:
>327_residues MGLSLPRLIDTLLSRKERLVALLNFKRKVAPASPSVNPDVEAFLQDYSIEVMPRTAEKVDDFRALLPEGTRVYIAHIEGT PIEEMVATAKRLNDDGFAVMPHFPARIIRDRATLKDWIARYQGEANVHQALLLAGGVEKPLGDFDSSMQLMETGLFDEAG FKRLHVAGHPEGNRDIDTDGSMKNVSAALRWKNDFQSRTDAQLAIATQFAFDAKPIIAWADTIAAEGITLPVHIGIAGPA KLQTLIKFAIACGVGPSLKVLQKRAMDVTKLLLPYEPTDVVAQLAAHKAANPDFNITNVHFFPLGGIKTNANWAIENGGS SAKPANA
Sequences:
>Translated_327_residues MGLSLPRLIDTLLSRKERLVALLNFKRKVAPASPSVNPDVEAFLQDYSIEVMPRTAEKVDDFRALLPEGTRVYIAHIEGT PIEEMVATAKRLNDDGFAVMPHFPARIIRDRATLKDWIARYQGEANVHQALLLAGGVEKPLGDFDSSMQLMETGLFDEAG FKRLHVAGHPEGNRDIDTDGSMKNVSAALRWKNDFQSRTDAQLAIATQFAFDAKPIIAWADTIAAEGITLPVHIGIAGPA KLQTLIKFAIACGVGPSLKVLQKRAMDVTKLLLPYEPTDVVAQLAAHKAANPDFNITNVHFFPLGGIKTNANWAIENGGS SAKPANA >Mature_326_residues GLSLPRLIDTLLSRKERLVALLNFKRKVAPASPSVNPDVEAFLQDYSIEVMPRTAEKVDDFRALLPEGTRVYIAHIEGTP IEEMVATAKRLNDDGFAVMPHFPARIIRDRATLKDWIARYQGEANVHQALLLAGGVEKPLGDFDSSMQLMETGLFDEAGF KRLHVAGHPEGNRDIDTDGSMKNVSAALRWKNDFQSRTDAQLAIATQFAFDAKPIIAWADTIAAEGITLPVHIGIAGPAK LQTLIKFAIACGVGPSLKVLQKRAMDVTKLLLPYEPTDVVAQLAAHKAANPDFNITNVHFFPLGGIKTNANWAIENGGSS AKPANA
Specific function: Unknown
COG id: COG0685
COG function: function code E; 5,10-methylenetetrahydrofolate reductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35596; Mature: 35465
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLSLPRLIDTLLSRKERLVALLNFKRKVAPASPSVNPDVEAFLQDYSIEVMPRTAEKVD CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCEEEECCHHHHHH DFRALLPEGTRVYIAHIEGTPIEEMVATAKRLNDDGFAVMPHFPARIIRDRATLKDWIAR HHHHHCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHH YQGEANVHQALLLAGGVEKPLGDFDSSMQLMETGLFDEAGFKRLHVAGHPEGNRDIDTDG HCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCC SMKNVSAALRWKNDFQSRTDAQLAIATQFAFDAKPIIAWADTIAAEGITLPVHIGIAGPA CHHHHHHHHHCCHHHCCCCCCEEEEEEEHHCCCCCCEEEHHHHHHCCEEEEEEECCCCHH KLQTLIKFAIACGVGPSLKVLQKRAMDVTKLLLPYEPTDVVAQLAAHKAANPDFNITNVH HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEE FFPLGGIKTNANWAIENGGSSAKPANA EEECCCEEECCCEEEECCCCCCCCCCC >Mature Secondary Structure GLSLPRLIDTLLSRKERLVALLNFKRKVAPASPSVNPDVEAFLQDYSIEVMPRTAEKVD CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCEEEECCHHHHHH DFRALLPEGTRVYIAHIEGTPIEEMVATAKRLNDDGFAVMPHFPARIIRDRATLKDWIAR HHHHHCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHH YQGEANVHQALLLAGGVEKPLGDFDSSMQLMETGLFDEAGFKRLHVAGHPEGNRDIDTDG HCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCC SMKNVSAALRWKNDFQSRTDAQLAIATQFAFDAKPIIAWADTIAAEGITLPVHIGIAGPA CHHHHHHHHHCCHHHCCCCCCEEEEEEEHHCCCCCCEEEHHHHHHCCEEEEEEECCCCHH KLQTLIKFAIACGVGPSLKVLQKRAMDVTKLLLPYEPTDVVAQLAAHKAANPDFNITNVH HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEE FFPLGGIKTNANWAIENGGSSAKPANA EEECCCEEECCCEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA