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The map label for this gene is yebA [H]

Identifier: 110680200

GI number: 110680200

Start: 2881528

End: 2882862

Strand: Direct

Name: yebA [H]

Synonym: RD1_3002

Alternate gene names: 110680200

Gene position: 2881528-2882862 (Clockwise)

Preceding gene: 110680199

Following gene: 110680201

Centisome position: 69.72

GC content: 59.25

Gene sequence:

>1335_bases
GTGCGGACACGTCTGGGCATCAGCATCCACAATTTTCTGGAACGCCTGTTCCCGGAGCGACGTGTTTTCCTGAAATCAGA
CACCGATACCCGCTTTATCCGGTTGCGCCCCGGAACGCAGTTGATTGCGGTCGGTGGTGTTGCAATCGTGGTCGGCTGGT
CCATCGTGGTGACATCCATGCTGTTCATGAACAGCATCGGGGCGGGGAATTTCCGCGAACAGGCCAAACGCGATCAAACC
ACCTATCAGGCGCGCCTGAATGATCTGGCAGAACAGCGTGACCGTCGCGCAGCAGAAGCGCTGGCGGCGCAACAGCGATT
CAATGCGGCGCTCGAACAGATATCGACCATGCAATCCGAGTTGCTGCGCTCTGAGACCCGGCGGCACGAGTTGGAAACCG
GTATCGAGGTCATTCAGGGCAACCTGAGGCGGGCCATCGGGGAGCGCGAGGCGGCCCGCACGGAGCTTGCAGCACTCAAG
GATCTTGGCACGCAGGGCAGTGACAAGGGTACGATGATGGCGCAGATCGGGGAAACGGCGCCGGTTGACATCCTTGCCGA
CGCGCTGGCCCGGACAGCGCAGGAGCGTGACGAAGTCGTCGAAGACGCGCAGGACGCACTGGAACAGGCCGACCGTCTGG
CGCTTGAGATCGCGCTGATGAAAGAGGACAACGACCAGATATTCCGCCAGTTGGAAGAGGCCATGACCATCTCGGTCGCG
CCGCTGGACAAGATGTTTCGCGAGGCTGGCCTGCCGACGGAACGCATACTGGATCAGATCCGTCGCGGCTATTCCGGTCA
GGGCGGCCCCCTGACCCCGCTGTCCTTTTCCAGTCGCGGCGAGGAACCGAGCGCCGATATGGAACGCGCGAACCGTCTGC
TCGGGCATATGGACACGCTCAACCTCTACCGGATCGCGGCTGAAAAGGCGCCTTTTGCATTACCGGTCAAACAGGCGTTC
CGCTTTACCAGCGATTATGGCTATCGGCGCGATCCGAAAACCGGGGGACGGCGGATGCACAAAGGTGTCGATTTCGCCGC
GTCGCTGGGCACCGACCTGCATGCGACCGCCGATGGCGTCGTGACCGAAGCAGGCTGGTCATCAGGCTATGGACGTCTTA
TTAAAATACAACATGAGTTCGGAATTGAGACCCGCTATGCGCATTTGTCAAAAATTCGCGTCAAAGTAGGGCAAAGGGTC
TCGCGTGGCGATCATATTGGTGATATGGGAGCATCCGGACGGGTGACCGGCGTGCATCTGCACTATGAGGTGCGCGTTGG
CGGTAAAGCTGTAAACCCAATGATCTTTATCAAGGCTGCACAAGATGTTTTCTAA

Upstream 100 bases:

>100_bases
AATGCAGGAAAGAGGGTTGCCCCTTTGAAACCCACTGTCTAATCACGAGGCCAATCGCTGCGCAGAAACGCAGGAGCAGA
GGCAACACAAGAGGCTTTGA

Downstream 100 bases:

>100_bases
AAGCAAAATGAACGAACCGGCGAGCAAACCAACCGCGACGGAAACGCCTGCGGCGGCGACGTCTGCGCCTGCTACGCCAA
AACAATCCGACTTCAAGGCG

Product: M24/M37 family peptidase putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MRTRLGISIHNFLERLFPERRVFLKSDTDTRFIRLRPGTQLIAVGGVAIVVGWSIVVTSMLFMNSIGAGNFREQAKRDQT
TYQARLNDLAEQRDRRAAEALAAQQRFNAALEQISTMQSELLRSETRRHELETGIEVIQGNLRRAIGEREAARTELAALK
DLGTQGSDKGTMMAQIGETAPVDILADALARTAQERDEVVEDAQDALEQADRLALEIALMKEDNDQIFRQLEEAMTISVA
PLDKMFREAGLPTERILDQIRRGYSGQGGPLTPLSFSSRGEEPSADMERANRLLGHMDTLNLYRIAAEKAPFALPVKQAF
RFTSDYGYRRDPKTGGRRMHKGVDFAASLGTDLHATADGVVTEAGWSSGYGRLIKIQHEFGIETRYAHLSKIRVKVGQRV
SRGDHIGDMGASGRVTGVHLHYEVRVGGKAVNPMIFIKAAQDVF

Sequences:

>Translated_444_residues
MRTRLGISIHNFLERLFPERRVFLKSDTDTRFIRLRPGTQLIAVGGVAIVVGWSIVVTSMLFMNSIGAGNFREQAKRDQT
TYQARLNDLAEQRDRRAAEALAAQQRFNAALEQISTMQSELLRSETRRHELETGIEVIQGNLRRAIGEREAARTELAALK
DLGTQGSDKGTMMAQIGETAPVDILADALARTAQERDEVVEDAQDALEQADRLALEIALMKEDNDQIFRQLEEAMTISVA
PLDKMFREAGLPTERILDQIRRGYSGQGGPLTPLSFSSRGEEPSADMERANRLLGHMDTLNLYRIAAEKAPFALPVKQAF
RFTSDYGYRRDPKTGGRRMHKGVDFAASLGTDLHATADGVVTEAGWSSGYGRLIKIQHEFGIETRYAHLSKIRVKVGQRV
SRGDHIGDMGASGRVTGVHLHYEVRVGGKAVNPMIFIKAAQDVF
>Mature_444_residues
MRTRLGISIHNFLERLFPERRVFLKSDTDTRFIRLRPGTQLIAVGGVAIVVGWSIVVTSMLFMNSIGAGNFREQAKRDQT
TYQARLNDLAEQRDRRAAEALAAQQRFNAALEQISTMQSELLRSETRRHELETGIEVIQGNLRRAIGEREAARTELAALK
DLGTQGSDKGTMMAQIGETAPVDILADALARTAQERDEVVEDAQDALEQADRLALEIALMKEDNDQIFRQLEEAMTISVA
PLDKMFREAGLPTERILDQIRRGYSGQGGPLTPLSFSSRGEEPSADMERANRLLGHMDTLNLYRIAAEKAPFALPVKQAF
RFTSDYGYRRDPKTGGRRMHKGVDFAASLGTDLHATADGVVTEAGWSSGYGRLIKIQHEFGIETRYAHLSKIRVKVGQRV
SRGDHIGDMGASGRVTGVHLHYEVRVGGKAVNPMIFIKAAQDVF

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=122, Percent_Identity=45.9016393442623, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1789099, Length=99, Percent_Identity=41.4141414141414, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082297, Length=97, Percent_Identity=37.1134020618557, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 49335; Mature: 49335

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTRLGISIHNFLERLFPERRVFLKSDTDTRFIRLRPGTQLIAVGGVAIVVGWSIVVTSM
CCCEECCHHHHHHHHHCCHHEEEEECCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHH
LFMNSIGAGNFREQAKRDQTTYQARLNDLAEQRDRRAAEALAAQQRFNAALEQISTMQSE
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLRSETRRHELETGIEVIQGNLRRAIGEREAARTELAALKDLGTQGSDKGTMMAQIGETA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCC
PVDILADALARTAQERDEVVEDAQDALEQADRLALEIALMKEDNDQIFRQLEEAMTISVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHEEEEH
PLDKMFREAGLPTERILDQIRRGYSGQGGPLTPLSFSSRGEEPSADMERANRLLGHMDTL
HHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
NLYRIAAEKAPFALPVKQAFRFTSDYGYRRDPKTGGRRMHKGVDFAASLGTDLHATADGV
HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCHHHHCCCCCCCCCCCC
VTEAGWSSGYGRLIKIQHEFGIETRYAHLSKIRVKVGQRVSRGDHIGDMGASGRVTGVHL
EECCCCCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEE
HYEVRVGGKAVNPMIFIKAAQDVF
EEEEEECCEECCCEEEEEECCCCC
>Mature Secondary Structure
MRTRLGISIHNFLERLFPERRVFLKSDTDTRFIRLRPGTQLIAVGGVAIVVGWSIVVTSM
CCCEECCHHHHHHHHHCCHHEEEEECCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHH
LFMNSIGAGNFREQAKRDQTTYQARLNDLAEQRDRRAAEALAAQQRFNAALEQISTMQSE
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLRSETRRHELETGIEVIQGNLRRAIGEREAARTELAALKDLGTQGSDKGTMMAQIGETA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCC
PVDILADALARTAQERDEVVEDAQDALEQADRLALEIALMKEDNDQIFRQLEEAMTISVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHEEEEH
PLDKMFREAGLPTERILDQIRRGYSGQGGPLTPLSFSSRGEEPSADMERANRLLGHMDTL
HHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
NLYRIAAEKAPFALPVKQAFRFTSDYGYRRDPKTGGRRMHKGVDFAASLGTDLHATADGV
HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCHHHHCCCCCCCCCCCC
VTEAGWSSGYGRLIKIQHEFGIETRYAHLSKIRVKVGQRVSRGDHIGDMGASGRVTGVHL
EECCCCCCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEE
HYEVRVGGKAVNPMIFIKAAQDVF
EEEEEECCEECCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]