Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

Click here to switch to the map view.

The map label for this gene is 110680176

Identifier: 110680176

GI number: 110680176

Start: 2854909

End: 2855145

Strand: Direct

Name: 110680176

Synonym: RD1_2977

Alternate gene names: NA

Gene position: 2854909-2855145 (Clockwise)

Preceding gene: 110680170

Following gene: 110680177

Centisome position: 69.07

GC content: 59.07

Gene sequence:

>237_bases
ATGCCCATGCAAGCCCACGAGATCGAAGACCTTTTGCGCCAAAGCTTTCCTGACGCCACCATTCAGGTGCACGGGGATGA
CGGCGTGCATATGGCCGCGATGGTCGTGGACGAAAGCTTTCGCGGCAAGAACCGCGTGCAGCAGCAGCGCGCGGTTTATG
CGGCCCTCAAAGGGAAAATGGATGGCTCGCAAGGTGAGTTGCATGCGCTTGCGCTGACAACAAAGGCACCGGACTGA

Upstream 100 bases:

>100_bases
CCCCGCTTTCGAAATATGCATCAACCCTGTCAAATTGACATCTTGTTCCGACGCGCGCCTCCGACTACATCTAACGTGCA
AAACGAAAGGGAGCCAGACC

Downstream 100 bases:

>100_bases
GTGATGTCCCTCTGGCACTGGCTGACATATCCGTTCAGACCCGGCCAGCGGCGGCCGCTGTCCTATCGTCAACCGCAACC
GATTGGCGATCAGACGGGCG

Product: BolA family protein, putative

Products: NA

Alternate protein names: BolA-Like Protein; Conserved Domain Protein; BolA Protein; Stress-Induced Morphogen; Stress-Induced Morphogen BolA-Like Protein; Morphology/Transcription Regulator BolA Family Protein; BolA/YrbA Family Protein

Number of amino acids: Translated: 78; Mature: 77

Protein sequence:

>78_residues
MPMQAHEIEDLLRQSFPDATIQVHGDDGVHMAAMVVDESFRGKNRVQQQRAVYAALKGKMDGSQGELHALALTTKAPD

Sequences:

>Translated_78_residues
MPMQAHEIEDLLRQSFPDATIQVHGDDGVHMAAMVVDESFRGKNRVQQQRAVYAALKGKMDGSQGELHALALTTKAPD
>Mature_77_residues
PMQAHEIEDLLRQSFPDATIQVHGDDGVHMAAMVVDESFRGKNRVQQQRAVYAALKGKMDGSQGELHALALTTKAPD

Specific function: Unknown

COG id: COG0271

COG function: function code T; Stress-induced morphogen (activity unknown)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8560; Mature: 8429

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMQAHEIEDLLRQSFPDATIQVHGDDGVHMAAMVVDESFRGKNRVQQQRAVYAALKGKM
CCCCHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
DGSQGELHALALTTKAPD
CCCCCCEEEEEEECCCCC
>Mature Secondary Structure 
PMQAHEIEDLLRQSFPDATIQVHGDDGVHMAAMVVDESFRGKNRVQQQRAVYAALKGKM
CCCHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
DGSQGELHALALTTKAPD
CCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA