Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

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The map label for this gene is sam [H]

Identifier: 110679989

GI number: 110679989

Start: 2650386

End: 2651249

Strand: Direct

Name: sam [H]

Synonym: RD1_2779

Alternate gene names: 110679989

Gene position: 2650386-2651249 (Clockwise)

Preceding gene: 110679988

Following gene: 110679990

Centisome position: 64.13

GC content: 57.29

Gene sequence:

>864_bases
ATGAGCGCGACACTGAAAGCCATGCTGTGGATGTTCGGATCCATTGCGTCCTTTTCCACGATGGCCGTGGCGGGGCGCGA
AGTCGCGAGCGAGCTTGATACCTTTGAAATCATGATGTTCCGCAGCCTCTTCGGGGTGCTGATCGTGGTGATCATCGCCG
GGTTTGCCGGCACGCTGGGTCAGATCAACACAGGCAACATGCGGTTGCATTTTGTGCGTAACCTTGCCCATTTCACCGGT
CAGAACCTTTGGTTCTACGCCGTCACCGTCATTCCGCTCGCACAGGTGTTCGCGCTTGAATTCACCTCTCCGCTCTGGGT
CATCGTGCTGTCACCCTTGATCCTTGGCGAAAGGCTCACCTTCATGCGGGCTGTGGCGGCTGTCATGGGGTTTATCGGCA
TATTGATCGTGGCCCGCCCCGATATGGCCGGCCTGAACGCAGGTGTTCTGGCCGCCGCCTCAAGCGCCATTTTCTTTGCG
CTCTCGATCATGCTGACCAAACGTCTGACACGTACCCAAAGCATCACCTGCATTCTGTTCTACCTCACAACCATGCAGCT
TGGCTTTGGTATCATCGCCGCCGGGTATGACGGTGATATTGCGGTGCCATCCCTGCAGGCATTGCCCCTCGTCATTCTGA
TTGGCGCGGCCGGGTTGCTTGCGCATTTTTGCCTGACCAACGCGCTGGCGCTGGCGCCAGCGACCGTGGTCGTGCCTATC
GATTTCATCCGCCTGCCTGCCATCGCAGTGGTGGGCATGCTGCTTTACAACGAAGCGATGGATATCTGGGTATTCGCGGG
GGCTGCGATCATCTTTGCGGGAAATTATCTGAACATATGGTCGGAAACCCGCGTGAAAACCTGA

Upstream 100 bases:

>100_bases
ATCAACCGCGTGACCTACGATATCACCTCAAAACCACCCGGCACGATCGAGTGGGAATAACCAAACAGGGCCGGGGTTCG
ATCATCCCGGTTGTACCGGT

Downstream 100 bases:

>100_bases
TCTGACGTTAGGTCACAGCAGCTTTTTCCCCTGCGTCAGTGATTGACCCATCACAATTACGTGCTTTATTGCGCCAATCT
GCGTTAACATAACGGTAACC

Product: integral membrane protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MSATLKAMLWMFGSIASFSTMAVAGREVASELDTFEIMMFRSLFGVLIVVIIAGFAGTLGQINTGNMRLHFVRNLAHFTG
QNLWFYAVTVIPLAQVFALEFTSPLWVIVLSPLILGERLTFMRAVAAVMGFIGILIVARPDMAGLNAGVLAAASSAIFFA
LSIMLTKRLTRTQSITCILFYLTTMQLGFGIIAAGYDGDIAVPSLQALPLVILIGAAGLLAHFCLTNALALAPATVVVPI
DFIRLPAIAVVGMLLYNEAMDIWVFAGAAIIFAGNYLNIWSETRVKT

Sequences:

>Translated_287_residues
MSATLKAMLWMFGSIASFSTMAVAGREVASELDTFEIMMFRSLFGVLIVVIIAGFAGTLGQINTGNMRLHFVRNLAHFTG
QNLWFYAVTVIPLAQVFALEFTSPLWVIVLSPLILGERLTFMRAVAAVMGFIGILIVARPDMAGLNAGVLAAASSAIFFA
LSIMLTKRLTRTQSITCILFYLTTMQLGFGIIAAGYDGDIAVPSLQALPLVILIGAAGLLAHFCLTNALALAPATVVVPI
DFIRLPAIAVVGMLLYNEAMDIWVFAGAAIIFAGNYLNIWSETRVKT
>Mature_286_residues
SATLKAMLWMFGSIASFSTMAVAGREVASELDTFEIMMFRSLFGVLIVVIIAGFAGTLGQINTGNMRLHFVRNLAHFTGQ
NLWFYAVTVIPLAQVFALEFTSPLWVIVLSPLILGERLTFMRAVAAVMGFIGILIVARPDMAGLNAGVLAAASSAIFFAL
SIMLTKRLTRTQSITCILFYLTTMQLGFGIIAAGYDGDIAVPSLQALPLVILIGAAGLLAHFCLTNALALAPATVVVPID
FIRLPAIAVVGMLLYNEAMDIWVFAGAAIIFAGNYLNIWSETRVKT

Specific function: Transports S-adenosylmethionine [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 30834; Mature: 30703

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATLKAMLWMFGSIASFSTMAVAGREVASELDTFEIMMFRSLFGVLIVVIIAGFAGTLG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
QINTGNMRLHFVRNLAHFTGQNLWFYAVTVIPLAQVFALEFTSPLWVIVLSPLILGERLT
CCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
FMRAVAAVMGFIGILIVARPDMAGLNAGVLAAASSAIFFALSIMLTKRLTRTQSITCILF
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLTTMQLGFGIIAAGYDGDIAVPSLQALPLVILIGAAGLLAHFCLTNALALAPATVVVPI
HHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEH
DFIRLPAIAVVGMLLYNEAMDIWVFAGAAIIFAGNYLNIWSETRVKT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCEEEECCCCCCCC
>Mature Secondary Structure 
SATLKAMLWMFGSIASFSTMAVAGREVASELDTFEIMMFRSLFGVLIVVIIAGFAGTLG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
QINTGNMRLHFVRNLAHFTGQNLWFYAVTVIPLAQVFALEFTSPLWVIVLSPLILGERLT
CCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
FMRAVAAVMGFIGILIVARPDMAGLNAGVLAAASSAIFFALSIMLTKRLTRTQSITCILF
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLTTMQLGFGIIAAGYDGDIAVPSLQALPLVILIGAAGLLAHFCLTNALALAPATVVVPI
HHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEH
DFIRLPAIAVVGMLLYNEAMDIWVFAGAAIIFAGNYLNIWSETRVKT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA