| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is ntrY [H]
Identifier: 110679972
GI number: 110679972
Start: 2633874
End: 2636132
Strand: Reverse
Name: ntrY [H]
Synonym: RD1_2762
Alternate gene names: 110679972
Gene position: 2636132-2633874 (Counterclockwise)
Preceding gene: 110679973
Following gene: 110679971
Centisome position: 63.78
GC content: 60.03
Gene sequence:
>2259_bases GTGGTTTCCATTGTGGAAAAATCACTGTGGATGAAGCTGGGACGGCTGCGTCGCATTAAACGTGTGCGCAGCGCTGCAAC GCTTGGCCTTGTTGTGCTGGGGCCGGTTTTGGCTTTGGCGACCTATCTTATCCTTGGGCCTTTGGGGCAGGCGGGCAATA CGCTTGGCTTGCGGCTGATCCTGCTGGCCGATCTCGTCTATATTCTCGTGGTTGCGGCATTGGTTCTGGCGCAGGTGGGC CGGTTGATCGCAGCGCGGCGCGCGAAATCTGCGGGTTCCCGGCTGCATTTGCGCCTCACCGGTGTTTTTGCGCTGCTTGC GCTGATCCCCACGGTGACGGTCGCCATCTTTGCGGGGCTGACCGTCAATGTCGGTCTGGAGGGGTGGTTTTCAGATCGCG TCAGAGAGGTTGTCGGAAATTCACTGGCCGCCGCGCAAGCCTACGAGGCCGAGCAACGTGTCGATCTGGCGGAGGATGCG CGCGTGCTGGCCGCATTGATCAACAAGGCGCGCCAGCGCGGGGTTATCATTTCTGACAGCGAACTCCTGGCCGATGGGCA GCGGCAGATTCAGCGGGGCCTGCGCGAGGCCTATCTGATTGACGGCACGGCAGATATCCGGGCCCGTGGCGATCGCTCAT ATCTCTTTGACTACGAGGCCCCGACGCAGGCCCAGCTGCGGCAGGCCAGCACCGGGGATGTCGTGGTGATCGAGGATTGG GCGAACAATGAATTCCGCGCGCTTGTGCGGCTGTCCTCATTTGTGGATCGCTTCCTGTATGTCAGCCGTGATGTTGACGG TGAGATACTGTCATTGCTGGATGAAACGCAGGAAACAGTGCGCCTTTACCAGCAACTCGAAAGCGAACGCGGGCGGCTGT TGTTTGAATTTGGCCTGTTGTATCTCGCCTTCGCCCTGATCCTCATCTTGGCGGCGATCTGGCTGGGCCTGTGGTTTGCA GAGCGGCTGTCGGGCCCGGTGGGGCGTTTGACGGGGGCGGCCCAGCGGGTCGGTGCCGGTGATCTGAACGTGCAGGTGCG CGAAGAAGATGGCAACGACGAGATCGCGATGCTCAGCCGCTATTTCAACCAGATGACCAAGCAGTTGAAGTTGCAGCGGG AAACGCTGGTGGAAAACACCGAACAGATCGAACGCCGCCGCCGTCTGTTTGATTCCGTGCTGAGTTCCGTGACCTCTGGT GTTGTGGGACTGGACCCAACCGGGCGCGTGAAATTCGTGAACCGTTCGGCGGAACGTCTGCTGGATTGGCACGAGGACCG CCAGTCGCTGGCCCTTGTCGCGGTGGTGCCTGAATTTGCCAACCTCTTTGACGCGATCAAGAGTTCACCGACCGAAACCG TTCAGGGCGAGGTGAAAGTGACCCGTCAGGGGCGTCTTGAAAACCTGTTGGTGCGGATGGCGACCCGCCGCTCCGAAGAT GGGACGCTTGAGGGGTATGTGGTCGCTTTTGACGACGTGACTGATCTGGTGAGCGCGCAGCGCATGGCGGCATGGGGGGA TGTGGCGCGCCGCATTGCGCATGAAATCAAGAACCCGCTGACCCCGATCCAGCTGTCTGCAGAGCGCATCAAGCGCAAGT TCTCACCGCGGGTCGGAGAGGATAGCGAAGCGCTTGAACAGATGACCGATGTGATCGTGCGCCAAACCGGTGATCTGCGG CGCATCGTGGATGAGTTTTCGAAATTTGCCCGCATGCCAGAACCTGAGCGTCGGGAAATTGATCTGGCTGCCCTCGTGCG CGATGCGGTGCTGCTGCAGGAAACCGGCCAGCCCAACGTGCGTTTCGAAAGCGACGTGCCCGATAGCGTCGTACCCAGCG ATCTGGATGCGACGATGATCACGCAGGCGTTGACAAATCTGATTAAGAACGCCGGAGAAGCCATTGAAAGCCTGTTGGAA AAGAGCGCACCGCCGGGTTATTCGCCGACAATCCGTGTGGCCTTGAAAGCGGGCAAGAACCGCGCAACGATCACCATTGC GGACAATGGGATCGGTCTGCCGGAAGATCGCGCGCGGCTGTTTGAACCCTATGTCACGACGCGCAGCGAAGGCACCGGCC TTGGCCTGCCGATTGTGAAAAAGATTATCGAAGAACACGGCGGCACGCTCGCCCTCGAAGATGCGCCTGCCTTTGGCACG GATACCCATGTTGGCGCGATGGCGGTGATCATGCTGCCCATCGTTGCCTCGCAACCCGAAAAAACACTCCCGCAAGAAGG ACTCCTGACCCATGAGTGA
Upstream 100 bases:
>100_bases ACTGCCACACAAACGTGGCCATCAGGGGACACCCCTTGTTCAGGACCACAAAATAGAGCGGTTCGCGCCCATGGCGCACC ATCATATGCGAGGATCTTGA
Downstream 100 bases:
>100_bases TATTCTGATTGTTGATGATGAACGCGATATTCGCGAACTGATCTCGGATATTCTGATTGACGAAGGCTATGCCACCCGGC TCGCCGGAAATTCGGACGAT
Product: nitrogen regulation protein ntrY, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 752; Mature: 752
Protein sequence:
>752_residues MVSIVEKSLWMKLGRLRRIKRVRSAATLGLVVLGPVLALATYLILGPLGQAGNTLGLRLILLADLVYILVVAALVLAQVG RLIAARRAKSAGSRLHLRLTGVFALLALIPTVTVAIFAGLTVNVGLEGWFSDRVREVVGNSLAAAQAYEAEQRVDLAEDA RVLAALINKARQRGVIISDSELLADGQRQIQRGLREAYLIDGTADIRARGDRSYLFDYEAPTQAQLRQASTGDVVVIEDW ANNEFRALVRLSSFVDRFLYVSRDVDGEILSLLDETQETVRLYQQLESERGRLLFEFGLLYLAFALILILAAIWLGLWFA ERLSGPVGRLTGAAQRVGAGDLNVQVREEDGNDEIAMLSRYFNQMTKQLKLQRETLVENTEQIERRRRLFDSVLSSVTSG VVGLDPTGRVKFVNRSAERLLDWHEDRQSLALVAVVPEFANLFDAIKSSPTETVQGEVKVTRQGRLENLLVRMATRRSED GTLEGYVVAFDDVTDLVSAQRMAAWGDVARRIAHEIKNPLTPIQLSAERIKRKFSPRVGEDSEALEQMTDVIVRQTGDLR RIVDEFSKFARMPEPERREIDLAALVRDAVLLQETGQPNVRFESDVPDSVVPSDLDATMITQALTNLIKNAGEAIESLLE KSAPPGYSPTIRVALKAGKNRATITIADNGIGLPEDRARLFEPYVTTRSEGTGLGLPIVKKIIEEHGGTLALEDAPAFGT DTHVGAMAVIMLPIVASQPEKTLPQEGLLTHE
Sequences:
>Translated_752_residues MVSIVEKSLWMKLGRLRRIKRVRSAATLGLVVLGPVLALATYLILGPLGQAGNTLGLRLILLADLVYILVVAALVLAQVG RLIAARRAKSAGSRLHLRLTGVFALLALIPTVTVAIFAGLTVNVGLEGWFSDRVREVVGNSLAAAQAYEAEQRVDLAEDA RVLAALINKARQRGVIISDSELLADGQRQIQRGLREAYLIDGTADIRARGDRSYLFDYEAPTQAQLRQASTGDVVVIEDW ANNEFRALVRLSSFVDRFLYVSRDVDGEILSLLDETQETVRLYQQLESERGRLLFEFGLLYLAFALILILAAIWLGLWFA ERLSGPVGRLTGAAQRVGAGDLNVQVREEDGNDEIAMLSRYFNQMTKQLKLQRETLVENTEQIERRRRLFDSVLSSVTSG VVGLDPTGRVKFVNRSAERLLDWHEDRQSLALVAVVPEFANLFDAIKSSPTETVQGEVKVTRQGRLENLLVRMATRRSED GTLEGYVVAFDDVTDLVSAQRMAAWGDVARRIAHEIKNPLTPIQLSAERIKRKFSPRVGEDSEALEQMTDVIVRQTGDLR RIVDEFSKFARMPEPERREIDLAALVRDAVLLQETGQPNVRFESDVPDSVVPSDLDATMITQALTNLIKNAGEAIESLLE KSAPPGYSPTIRVALKAGKNRATITIADNGIGLPEDRARLFEPYVTTRSEGTGLGLPIVKKIIEEHGGTLALEDAPAFGT DTHVGAMAVIMLPIVASQPEKTLPQEGLLTHE >Mature_752_residues MVSIVEKSLWMKLGRLRRIKRVRSAATLGLVVLGPVLALATYLILGPLGQAGNTLGLRLILLADLVYILVVAALVLAQVG RLIAARRAKSAGSRLHLRLTGVFALLALIPTVTVAIFAGLTVNVGLEGWFSDRVREVVGNSLAAAQAYEAEQRVDLAEDA RVLAALINKARQRGVIISDSELLADGQRQIQRGLREAYLIDGTADIRARGDRSYLFDYEAPTQAQLRQASTGDVVVIEDW ANNEFRALVRLSSFVDRFLYVSRDVDGEILSLLDETQETVRLYQQLESERGRLLFEFGLLYLAFALILILAAIWLGLWFA ERLSGPVGRLTGAAQRVGAGDLNVQVREEDGNDEIAMLSRYFNQMTKQLKLQRETLVENTEQIERRRRLFDSVLSSVTSG VVGLDPTGRVKFVNRSAERLLDWHEDRQSLALVAVVPEFANLFDAIKSSPTETVQGEVKVTRQGRLENLLVRMATRRSED GTLEGYVVAFDDVTDLVSAQRMAAWGDVARRIAHEIKNPLTPIQLSAERIKRKFSPRVGEDSEALEQMTDVIVRQTGDLR RIVDEFSKFARMPEPERREIDLAALVRDAVLLQETGQPNVRFESDVPDSVVPSDLDATMITQALTNLIKNAGEAIESLLE KSAPPGYSPTIRVALKAGKNRATITIADNGIGLPEDRARLFEPYVTTRSEGTGLGLPIVKKIIEEHGGTLALEDAPAFGT DTHVGAMAVIMLPIVASQPEKTLPQEGLLTHE
Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]
COG id: COG5000
COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=436, Percent_Identity=25, Blast_Score=121, Evalue=2e-28, Organism=Escherichia coli, GI1790436, Length=224, Percent_Identity=29.0178571428571, Blast_Score=96, Evalue=8e-21, Organism=Escherichia coli, GI1790300, Length=347, Percent_Identity=26.5129682997118, Blast_Score=79, Evalue=2e-15, Organism=Escherichia coli, GI1789808, Length=241, Percent_Identity=26.5560165975104, Blast_Score=70, Evalue=5e-13, Organism=Escherichia coli, GI1789149, Length=238, Percent_Identity=27.3109243697479, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1790346, Length=218, Percent_Identity=29.3577981651376, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1787894, Length=251, Percent_Identity=25.8964143426295, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR017232 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 82870; Mature: 82870
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: PS50885 HAMP ; PS50112 PAS ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSIVEKSLWMKLGRLRRIKRVRSAATLGLVVLGPVLALATYLILGPLGQAGNTLGLRLI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH LLADLVYILVVAALVLAQVGRLIAARRAKSAGSRLHLRLTGVFALLALIPTVTVAIFAGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCC TVNVGLEGWFSDRVREVVGNSLAAAQAYEAEQRVDLAEDARVLAALINKARQRGVIISDS EEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEECCH ELLADGQRQIQRGLREAYLIDGTADIRARGDRSYLFDYEAPTQAQLRQASTGDVVVIEDW HHHHHHHHHHHHHHHHHEEECCCHHHCCCCCCCEEEECCCCCHHHHHHCCCCCEEEEECC ANNEFRALVRLSSFVDRFLYVSRDVDGEILSLLDETQETVRLYQQLESERGRLLFEFGLL CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH YLAFALILILAAIWLGLWFAERLSGPVGRLTGAAQRVGAGDLNVQVREEDGNDEIAMLSR HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHH YFNQMTKQLKLQRETLVENTEQIERRRRLFDSVLSSVTSGVVGLDPTGRVKFVNRSAERL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHH LDWHEDRQSLALVAVVPEFANLFDAIKSSPTETVQGEVKVTRQGRLENLLVRMATRRSED HHHHHHHHHEEHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCC GTLEGYVVAFDDVTDLVSAQRMAAWGDVARRIAHEIKNPLTPIQLSAERIKRKFSPRVGE CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC DSEALEQMTDVIVRQTGDLRRIVDEFSKFARMPEPERREIDLAALVRDAVLLQETGQPNV CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC RFESDVPDSVVPSDLDATMITQALTNLIKNAGEAIESLLEKSAPPGYSPTIRVALKAGKN EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC RATITIADNGIGLPEDRARLFEPYVTTRSEGTGLGLPIVKKIIEEHGGTLALEDAPAFGT EEEEEEECCCCCCCHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCC DTHVGAMAVIMLPIVASQPEKTLPQEGLLTHE CCHHHHHHHHHHHHHCCCCHHCCCCCCCCCCC >Mature Secondary Structure MVSIVEKSLWMKLGRLRRIKRVRSAATLGLVVLGPVLALATYLILGPLGQAGNTLGLRLI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH LLADLVYILVVAALVLAQVGRLIAARRAKSAGSRLHLRLTGVFALLALIPTVTVAIFAGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCC TVNVGLEGWFSDRVREVVGNSLAAAQAYEAEQRVDLAEDARVLAALINKARQRGVIISDS EEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEECCH ELLADGQRQIQRGLREAYLIDGTADIRARGDRSYLFDYEAPTQAQLRQASTGDVVVIEDW HHHHHHHHHHHHHHHHHEEECCCHHHCCCCCCCEEEECCCCCHHHHHHCCCCCEEEEECC ANNEFRALVRLSSFVDRFLYVSRDVDGEILSLLDETQETVRLYQQLESERGRLLFEFGLL CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH YLAFALILILAAIWLGLWFAERLSGPVGRLTGAAQRVGAGDLNVQVREEDGNDEIAMLSR HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHH YFNQMTKQLKLQRETLVENTEQIERRRRLFDSVLSSVTSGVVGLDPTGRVKFVNRSAERL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHH LDWHEDRQSLALVAVVPEFANLFDAIKSSPTETVQGEVKVTRQGRLENLLVRMATRRSED HHHHHHHHHEEHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCC GTLEGYVVAFDDVTDLVSAQRMAAWGDVARRIAHEIKNPLTPIQLSAERIKRKFSPRVGE CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC DSEALEQMTDVIVRQTGDLRRIVDEFSKFARMPEPERREIDLAALVRDAVLLQETGQPNV CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC RFESDVPDSVVPSDLDATMITQALTNLIKNAGEAIESLLEKSAPPGYSPTIRVALKAGKN EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC RATITIADNGIGLPEDRARLFEPYVTTRSEGTGLGLPIVKKIIEEHGGTLALEDAPAFGT EEEEEEECCCCCCCHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCC DTHVGAMAVIMLPIVASQPEKTLPQEGLLTHE CCHHHHHHHHHHHHHCCCCHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1661370 [H]