| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is zwf [H]
Identifier: 110679937
GI number: 110679937
Start: 2593081
End: 2594544
Strand: Reverse
Name: zwf [H]
Synonym: RD1_2722
Alternate gene names: 110679937
Gene position: 2594544-2593081 (Counterclockwise)
Preceding gene: 110679939
Following gene: 110679936
Centisome position: 62.77
GC content: 59.08
Gene sequence:
>1464_bases ATGGTTTCACGCGTCATACCGGTTGATCCCTTCGATCTGGTTGTTTTCGGCGGCACGGGTGACCTTGCCCGCCGCAAGAT CCTGCCGGCCTTGTTTCGACGCTTTTGCGCGGGGCAGATGCCTGAAACGGCCCGTATCATCGGGGCGGCACGATCGGACA TGTCCGATGCCTCCTACACGCAAATGGTCGCGGATGCGCTGCGCGAATTCAGCCCCGGCGCGCAAAGTCATGCGGACCGG CTGAGGGATTTTCTTGGCGTTATCTCTTACGTCCGGATTGACGCCATGGGCGAGGCCGGCTGGGCGGAGCTGACCCAAAA GATCACCTCGGTGGACCGGGTTGAGGCCTATTATTTTTCCGTCGCGCCCTCCTTGTTCGGCCCGCTGGCGGAGCGTTTGC AAGGACATGGGCTGGCGGACAGAAACGCGCGGATCGTCGTGGAAAAACCTTTTGGACGCGATCTTGAAACGGCCAAGGCG CTGAATGCCACGCTCGCGCGCTATTTTGACGAAACACAGATTTATCGGATTGATCACTACCTTGGCAAGGAAACCGTGCA GAACCTTATGGCTGTGCGCTTTGGCAATATGCTGTTTGAACCGTTGTGGAACAGCCAGTTTGTTGATCATATTCAGATCA CGGTCGCCGAAACGGTGGGCGTTGGCGGGCGCGGTGAATACTATGACCGGGCAGGGGCGATGCGCGACATGGTGCAAAAC CATCTGATGCAGCTTTTGTGCCTGATCGCGATGGAACCTCCGGCACGCTTTGACCCTGATGCGGTGCGCGACGAAAAGCT CAAGGTCATCCGCGCTCTGGAGCCGGTAGAGCCGCATCACATCGTGCGCGGCCAATACAACGCCGACCCGGATGATGCCG ACACCTATCCCGACTACCGCACCGCCGTGGGCAACCCGCGTTCAAGAACGGAAAGTTTCGTGGCGCTGAAAACCCATATT GCCAACTGGCGGTGGGCCGGGACGCCGTTTTATCTGCGCACCGGCAAGCGCATGCGGGAACGCTCCAGCGAGATATCCAT CGTGTTCAAGGAAACCCCGCACTCCATCTTTGCCGAAGATGCCGGGCGGCATCGCAATGTCCTGTCAATCAAGCTGCAGC CAAATGAAGGCATCACGCTCGGTGTGACGATCAAGGAGCCCGGACCGGGAGGGATGCGGTTGATCGACGTACCGCTGGAT ATGACATTTGCCGAAGCGCTTGGTCCGGATGGCGGTGAGACGGTGGATGCCTATGAGCGCTTGATCATGGATGTGATCCG GGGCAACCAGACGTTGTTCATGCGCGGTGATGAGGTTGAGGCGGCGTGGGATTGGACCGATCCGATTATTCAGGGCTGGA CGGATCGGGGCGATGTGCCAAAACCCTATGACAGCCTGAGCGACGGGCCGGATGCATCCGCGCAGCTGCTGGTGCGGGAC AAGAGAGAATGGCGAAAGATCTGA
Upstream 100 bases:
>100_bases CTGATTTACGCGCACAGTGTTGTGAACGCTTTACCATTGGCCCATGTTTGCGCTAACACACGCCGGAGCCGAATCCGGCC TGCAACATGAGGTGCCCATC
Downstream 100 bases:
>100_bases ACCATGCAAATCATTGAGTATATCGACCGGGATCTTGCGGCCATTGGCGTGGCCGACACGCTGGCCAGCGGGTTGAAAAA AGCGCTGTCGATACAGGAAA
Product: glucose-6-phosphate 1-dehydrogenase
Products: NA
Alternate protein names: G6PD [H]
Number of amino acids: Translated: 487; Mature: 487
Protein sequence:
>487_residues MVSRVIPVDPFDLVVFGGTGDLARRKILPALFRRFCAGQMPETARIIGAARSDMSDASYTQMVADALREFSPGAQSHADR LRDFLGVISYVRIDAMGEAGWAELTQKITSVDRVEAYYFSVAPSLFGPLAERLQGHGLADRNARIVVEKPFGRDLETAKA LNATLARYFDETQIYRIDHYLGKETVQNLMAVRFGNMLFEPLWNSQFVDHIQITVAETVGVGGRGEYYDRAGAMRDMVQN HLMQLLCLIAMEPPARFDPDAVRDEKLKVIRALEPVEPHHIVRGQYNADPDDADTYPDYRTAVGNPRSRTESFVALKTHI ANWRWAGTPFYLRTGKRMRERSSEISIVFKETPHSIFAEDAGRHRNVLSIKLQPNEGITLGVTIKEPGPGGMRLIDVPLD MTFAEALGPDGGETVDAYERLIMDVIRGNQTLFMRGDEVEAAWDWTDPIIQGWTDRGDVPKPYDSLSDGPDASAQLLVRD KREWRKI
Sequences:
>Translated_487_residues MVSRVIPVDPFDLVVFGGTGDLARRKILPALFRRFCAGQMPETARIIGAARSDMSDASYTQMVADALREFSPGAQSHADR LRDFLGVISYVRIDAMGEAGWAELTQKITSVDRVEAYYFSVAPSLFGPLAERLQGHGLADRNARIVVEKPFGRDLETAKA LNATLARYFDETQIYRIDHYLGKETVQNLMAVRFGNMLFEPLWNSQFVDHIQITVAETVGVGGRGEYYDRAGAMRDMVQN HLMQLLCLIAMEPPARFDPDAVRDEKLKVIRALEPVEPHHIVRGQYNADPDDADTYPDYRTAVGNPRSRTESFVALKTHI ANWRWAGTPFYLRTGKRMRERSSEISIVFKETPHSIFAEDAGRHRNVLSIKLQPNEGITLGVTIKEPGPGGMRLIDVPLD MTFAEALGPDGGETVDAYERLIMDVIRGNQTLFMRGDEVEAAWDWTDPIIQGWTDRGDVPKPYDSLSDGPDASAQLLVRD KREWRKI >Mature_487_residues MVSRVIPVDPFDLVVFGGTGDLARRKILPALFRRFCAGQMPETARIIGAARSDMSDASYTQMVADALREFSPGAQSHADR LRDFLGVISYVRIDAMGEAGWAELTQKITSVDRVEAYYFSVAPSLFGPLAERLQGHGLADRNARIVVEKPFGRDLETAKA LNATLARYFDETQIYRIDHYLGKETVQNLMAVRFGNMLFEPLWNSQFVDHIQITVAETVGVGGRGEYYDRAGAMRDMVQN HLMQLLCLIAMEPPARFDPDAVRDEKLKVIRALEPVEPHHIVRGQYNADPDDADTYPDYRTAVGNPRSRTESFVALKTHI ANWRWAGTPFYLRTGKRMRERSSEISIVFKETPHSIFAEDAGRHRNVLSIKLQPNEGITLGVTIKEPGPGGMRLIDVPLD MTFAEALGPDGGETVDAYERLIMDVIRGNQTLFMRGDEVEAAWDWTDPIIQGWTDRGDVPKPYDSLSDGPDASAQLLVRD KREWRKI
Specific function: Pentose phosphate pathway; first step. [C]
COG id: COG0364
COG function: function code G; Glucose-6-phosphate 1-dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glucose-6-phosphate dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI108773793, Length=481, Percent_Identity=35.7588357588358, Blast_Score=297, Evalue=2e-80, Organism=Homo sapiens, GI109389365, Length=481, Percent_Identity=35.7588357588358, Blast_Score=296, Evalue=2e-80, Organism=Homo sapiens, GI52145310, Length=487, Percent_Identity=28.1314168377823, Blast_Score=171, Evalue=2e-42, Organism=Escherichia coli, GI1788158, Length=484, Percent_Identity=42.9752066115703, Blast_Score=405, Evalue=1e-114, Organism=Caenorhabditis elegans, GI17538218, Length=488, Percent_Identity=36.2704918032787, Blast_Score=306, Evalue=1e-83, Organism=Saccharomyces cerevisiae, GI6324088, Length=481, Percent_Identity=33.0561330561331, Blast_Score=275, Evalue=2e-74, Organism=Drosophila melanogaster, GI24643352, Length=471, Percent_Identity=35.6687898089172, Blast_Score=280, Evalue=2e-75, Organism=Drosophila melanogaster, GI24643350, Length=471, Percent_Identity=35.6687898089172, Blast_Score=280, Evalue=2e-75, Organism=Drosophila melanogaster, GI221513548, Length=487, Percent_Identity=29.1581108829569, Blast_Score=201, Evalue=1e-51,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001282 - InterPro: IPR019796 - InterPro: IPR022675 - InterPro: IPR022674 - InterPro: IPR016040 [H]
Pfam domain/function: PF02781 G6PD_C; PF00479 G6PD_N [H]
EC number: =1.1.1.49 [H]
Molecular weight: Translated: 54719; Mature: 54719
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: PS00069 G6P_DEHYDROGENASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSRVIPVDPFDLVVFGGTGDLARRKILPALFRRFCAGQMPETARIIGAARSDMSDASYT CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHH QMVADALREFSPGAQSHADRLRDFLGVISYVRIDAMGEAGWAELTQKITSVDRVEAYYFS HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH VAPSLFGPLAERLQGHGLADRNARIVVEKPFGRDLETAKALNATLARYFDETQIYRIDHY HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHH LGKETVQNLMAVRFGNMLFEPLWNSQFVDHIQITVAETVGVGGRGEYYDRAGAMRDMVQN HCHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEHHHCCCCCCCHHHHHHHHHHHHHH HLMQLLCLIAMEPPARFDPDAVRDEKLKVIRALEPVEPHHIVRGQYNADPDDADTYPDYR HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCHH TAVGNPRSRTESFVALKTHIANWRWAGTPFYLRTGKRMRERSSEISIVFKETPHSIFAED HHCCCCHHHHHHHHHHHHHHCCCEECCCCEEEECCHHHHHCCCCEEEEEECCCCHHHHHC AGRHRNVLSIKLQPNEGITLGVTIKEPGPGGMRLIDVPLDMTFAEALGPDGGETVDAYER CCCCCCEEEEEECCCCCEEEEEEEECCCCCCCEEEEECCCHHHHHHHCCCCCCHHHHHHH LIMDVIRGNQTLFMRGDEVEAAWDWTDPIIQGWTDRGDVPKPYDSLSDGPDASAQLLVRD HHHHHHCCCCEEEEECCCCCEECCCCCHHHHCCCCCCCCCCCHHCCCCCCCCCHHHHHHC KREWRKI HHHHCCC >Mature Secondary Structure MVSRVIPVDPFDLVVFGGTGDLARRKILPALFRRFCAGQMPETARIIGAARSDMSDASYT CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHH QMVADALREFSPGAQSHADRLRDFLGVISYVRIDAMGEAGWAELTQKITSVDRVEAYYFS HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH VAPSLFGPLAERLQGHGLADRNARIVVEKPFGRDLETAKALNATLARYFDETQIYRIDHY HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHH LGKETVQNLMAVRFGNMLFEPLWNSQFVDHIQITVAETVGVGGRGEYYDRAGAMRDMVQN HCHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEHHHCCCCCCCHHHHHHHHHHHHHH HLMQLLCLIAMEPPARFDPDAVRDEKLKVIRALEPVEPHHIVRGQYNADPDDADTYPDYR HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCHH TAVGNPRSRTESFVALKTHIANWRWAGTPFYLRTGKRMRERSSEISIVFKETPHSIFAED HHCCCCHHHHHHHHHHHHHHCCCEECCCCEEEECCHHHHHCCCCEEEEEECCCCHHHHHC AGRHRNVLSIKLQPNEGITLGVTIKEPGPGGMRLIDVPLDMTFAEALGPDGGETVDAYER CCCCCCEEEEEECCCCCEEEEEEEECCCCCCCEEEEECCCHHHHHHHCCCCCCHHHHHHH LIMDVIRGNQTLFMRGDEVEAAWDWTDPIIQGWTDRGDVPKPYDSLSDGPDASAQLLVRD HHHHHHCCCCEEEEECCCCCEECCCCCHHHHCCCCCCCCCCCHHCCCCCCCCCHHHHHHC KREWRKI HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10400573; 11481430 [H]