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The map label for this gene is rsmB [H]

Identifier: 110679930

GI number: 110679930

Start: 2584031

End: 2585191

Strand: Reverse

Name: rsmB [H]

Synonym: RD1_2712

Alternate gene names: 110679930

Gene position: 2585191-2584031 (Counterclockwise)

Preceding gene: 110679931

Following gene: 110679929

Centisome position: 62.55

GC content: 64.94

Gene sequence:

>1161_bases
ATGACACCCGCCGCGCGCATTGCTGCCGCCATCGAGATTCTGGATGTGATCGCGCAAGGGGCCGCCGCCGAACAGGCCCT
GACCCGGTGGGCGCGACTAAGCCGTTTTGCCGGATCCAAGGATCGCGCGGCGGTGCGGGACCACGTCTTTGACGTGCTGC
GCCTCAGGGATACGGTTGCGGCCCTTGGGGGTGGCGCGTCGGGCCGGGCGCTGATGCTGGGCCTGCTGCGGTATAACGGG
CTTGACCCATCGGCGTTTTTCAACGGTCAGGGCTATGCGCCAGCGGCCTTGTCCGCGCAGGAGCTGGCATACAGTGCAGA
CCGGGACACCGCCTGCGGCCTGTGGAACCTGCCGGATTGGCTTGTGCCTGAATTTGAGCGCAGCCTCGGGGAAGAGGCGG
GCGCGATTGCGCAGGCGCTGACGCAGCGCGGACCTGTCACCCTGCGGGTCAATCTGAAACGGGCGGACGTCACAACAGCC
ATGCACAGTCTCGCAACTGATGGCGTTGTGACCACCGCAAACCCGGTCTGCGCGACGGCCCTGACGGTCACCGAGGGCGC
GCGACGGGTCAGGAATGCGACGGCCTTTCTGTCAGGTCAGGTTGAGGTGCAGGACGCGGCATCCCAAGCCGTTGTCGATG
ACTTGCCAGAAGCACAGCGCTGTCTGGATTACTGCGCGGGCGGGGGCGGCAAGGCTCTGGCCATGGCCGCGCAGGATGGC
CGCCGGGTTTTCGCGCATGACCGTGACCCGGACAGAATGAGGGATATCGCCCCCCGCGCCAAACGCGCCGGGGCGGTGAT
AAAGCAGCTGGCAACAGACCGCTTGCACGCCCATGGGCCGTTCGATCTGGTGTTATGTGATGCGCCCTGTTCGGGCAGTG
GCGCGTGGCGGCGCAGCCCGGAGGCAAAGTGGCGCTTTACCAGCGCGCGTTTGCAGGAATTGCAGGCGATGCAGCAGGAT
ATCCTGCGCGAGGCGGCACCGCTTGTGGATGCGCAAGGGTGGTTGGTTTATGCCACATGCTCTGTGCTGAGAGCGGAAAA
TGAGGATCAGATCACGGCATTTCTGTCGCAGAACCCGGACTGGCGCTGCACGCTCCAAAGGCGCTGGCCACTGTCTGAAA
ACTGCGACGGGTTTTACACGGCACACTTGACGCGGGGATAA

Upstream 100 bases:

>100_bases
GGGCCTCAAGGAAAGCCATGTTCATGATGTGCAGATCACGCGCGAAAGCCCGAATTATCGGGTTGGCTAGTCACGCCCCC
GGTCTGAAGGAGAGGGCGCA

Downstream 100 bases:

>100_bases
TTGCTGCAATACTCAACCTTAACGAGCACACCTGATCGTGGTTAAGTCGGGATTAACTCCTAGGGCGCTTTGATGACGGT
GCGATTCGATACCAGGAGCG

Product: NOL1/NOP2/sun family protein, putative

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 386; Mature: 385

Protein sequence:

>386_residues
MTPAARIAAAIEILDVIAQGAAAEQALTRWARLSRFAGSKDRAAVRDHVFDVLRLRDTVAALGGGASGRALMLGLLRYNG
LDPSAFFNGQGYAPAALSAQELAYSADRDTACGLWNLPDWLVPEFERSLGEEAGAIAQALTQRGPVTLRVNLKRADVTTA
MHSLATDGVVTTANPVCATALTVTEGARRVRNATAFLSGQVEVQDAASQAVVDDLPEAQRCLDYCAGGGGKALAMAAQDG
RRVFAHDRDPDRMRDIAPRAKRAGAVIKQLATDRLHAHGPFDLVLCDAPCSGSGAWRRSPEAKWRFTSARLQELQAMQQD
ILREAAPLVDAQGWLVYATCSVLRAENEDQITAFLSQNPDWRCTLQRRWPLSENCDGFYTAHLTRG

Sequences:

>Translated_386_residues
MTPAARIAAAIEILDVIAQGAAAEQALTRWARLSRFAGSKDRAAVRDHVFDVLRLRDTVAALGGGASGRALMLGLLRYNG
LDPSAFFNGQGYAPAALSAQELAYSADRDTACGLWNLPDWLVPEFERSLGEEAGAIAQALTQRGPVTLRVNLKRADVTTA
MHSLATDGVVTTANPVCATALTVTEGARRVRNATAFLSGQVEVQDAASQAVVDDLPEAQRCLDYCAGGGGKALAMAAQDG
RRVFAHDRDPDRMRDIAPRAKRAGAVIKQLATDRLHAHGPFDLVLCDAPCSGSGAWRRSPEAKWRFTSARLQELQAMQQD
ILREAAPLVDAQGWLVYATCSVLRAENEDQITAFLSQNPDWRCTLQRRWPLSENCDGFYTAHLTRG
>Mature_385_residues
TPAARIAAAIEILDVIAQGAAAEQALTRWARLSRFAGSKDRAAVRDHVFDVLRLRDTVAALGGGASGRALMLGLLRYNGL
DPSAFFNGQGYAPAALSAQELAYSADRDTACGLWNLPDWLVPEFERSLGEEAGAIAQALTQRGPVTLRVNLKRADVTTAM
HSLATDGVVTTANPVCATALTVTEGARRVRNATAFLSGQVEVQDAASQAVVDDLPEAQRCLDYCAGGGGKALAMAAQDGR
RVFAHDRDPDRMRDIAPRAKRAGAVIKQLATDRLHAHGPFDLVLCDAPCSGSGAWRRSPEAKWRFTSARLQELQAMQQDI
LREAAPLVDAQGWLVYATCSVLRAENEDQITAFLSQNPDWRCTLQRRWPLSENCDGFYTAHLTRG

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=287, Percent_Identity=27.1777003484321, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI76150623, Length=287, Percent_Identity=27.1777003484321, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI270288816, Length=177, Percent_Identity=34.4632768361582, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI270288818, Length=177, Percent_Identity=34.4632768361582, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI8922322, Length=177, Percent_Identity=34.4632768361582, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI23199998, Length=177, Percent_Identity=34.4632768361582, Blast_Score=73, Evalue=5e-13,
Organism=Escherichia coli, GI2367212, Length=425, Percent_Identity=27.7647058823529, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI87081985, Length=271, Percent_Identity=25.0922509225092, Blast_Score=72, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17536757, Length=316, Percent_Identity=27.8481012658228, Blast_Score=84, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6324268, Length=294, Percent_Identity=25.8503401360544, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI22024126, Length=227, Percent_Identity=29.9559471365639, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI21355201, Length=177, Percent_Identity=31.638418079096, Blast_Score=72, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 41669; Mature: 41538

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAARIAAAIEILDVIAQGAAAEQALTRWARLSRFAGSKDRAAVRDHVFDVLRLRDTVA
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
ALGGGASGRALMLGLLRYNGLDPSAFFNGQGYAPAALSAQELAYSADRDTACGLWNLPDW
HHCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCHHCCHHHHHHCCCCCCCCCCCCCCHH
LVPEFERSLGEEAGAIAQALTQRGPVTLRVNLKRADVTTAMHSLATDGVVTTANPVCATA
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHCCCEEECCCCHHHHH
LTVTEGARRVRNATAFLSGQVEVQDAASQAVVDDLPEAQRCLDYCAGGGGKALAMAAQDG
HHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEECCC
RRVFAHDRDPDRMRDIAPRAKRAGAVIKQLATDRLHAHGPFDLVLCDAPCSGSGAWRRSP
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCC
EAKWRFTSARLQELQAMQQDILREAAPLVDAQGWLVYATCSVLRAENEDQITAFLSQNPD
CCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCCCCCEEEEECCCCC
WRCTLQRRWPLSENCDGFYTAHLTRG
EEEEEEECCCCCCCCCCEEEEEEECC
>Mature Secondary Structure 
TPAARIAAAIEILDVIAQGAAAEQALTRWARLSRFAGSKDRAAVRDHVFDVLRLRDTVA
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
ALGGGASGRALMLGLLRYNGLDPSAFFNGQGYAPAALSAQELAYSADRDTACGLWNLPDW
HHCCCCCCHHHHHHHHHHCCCCCCCEECCCCCCCHHCCHHHHHHCCCCCCCCCCCCCCHH
LVPEFERSLGEEAGAIAQALTQRGPVTLRVNLKRADVTTAMHSLATDGVVTTANPVCATA
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHCCCEEECCCCHHHHH
LTVTEGARRVRNATAFLSGQVEVQDAASQAVVDDLPEAQRCLDYCAGGGGKALAMAAQDG
HHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEECCC
RRVFAHDRDPDRMRDIAPRAKRAGAVIKQLATDRLHAHGPFDLVLCDAPCSGSGAWRRSP
CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCC
EAKWRFTSARLQELQAMQQDILREAAPLVDAQGWLVYATCSVLRAENEDQITAFLSQNPD
CCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCCCCCEEEEECCCCC
WRCTLQRRWPLSENCDGFYTAHLTRG
EEEEEEECCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]