| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is livK [C]
Identifier: 110679858
GI number: 110679858
Start: 2511596
End: 2512786
Strand: Reverse
Name: livK [C]
Synonym: RD1_2631
Alternate gene names: 110679858
Gene position: 2512786-2511596 (Counterclockwise)
Preceding gene: 110679861
Following gene: 110679857
Centisome position: 60.8
GC content: 59.7
Gene sequence:
>1191_bases ATGAAAAAGTTGCTTATGGCCACAACGGCTGCAGCACTGATTGCCACCACTGCGCTGGCGGATGATACGAAAAGTGAAGT AACGCTCGGGGTGCTCTTCGGGTTCACCGGTCCGATCGAATCGCTGACTGGCCCGATGGCCGCCGGTGCCGAACTTGCCA TGGCGGAAGCGACCGAAAGCGGCAAATTTCTCGACTCTGCGACCGTGACATCAATCCGGGCTGACACCGGTTGCATCGAC AACGGTCTGAGCACATCCAATGGCGAGCGGTTGATCGCGGAAGGCATCAACGGGTTGATCGGCGGGGATTGCTCCGGTGT CACGGGTGCGATTTTGCAAAACGTGGCGATCCCGAACGGCATGGTGATGATTTCACCCTCGGCCACATCGCCGGGCCTGA CCACGGTTGAAGACAACGACCTGTTTTTCCGCACCGCCCCGTCGGACGCGCGCGAAGGTCAGGTGATGGCTGAAATCCTG CAGGAACGTGGGGTGAAATCCATCGCGCTGACCTATACCAACAACGACTACGGCAAAGGTCTCGCGGACGCGATCCAGAG CAATTTCGAAAGCATCGGCGGGGAAGTCACGATCGTTGCCGCGCATGAAGACGGCAAGGCGGATTACTCCGCTGAAATGG GCGCGCTGGCCTCGGCGGGTGGCGATATCCTCGTGGTTGCGGGCTATCTCGATCAAGGCGGCCTCGGTATCATCAACGCA GCACTGGACACGGGCGCATTTGACACCTTCGGTCTGCCCGGCGGCATGATCGGCGACAGCCTGCCTGCCAATGTCGGCTC TGCGCTGAACGGGTCCTACGGTCAGATCGCGGGGTCCGGTGGTGAAGGCATCGAAAAGCTCAAGGCGCTTTCGGGCGACG CATTTGATGCCACATCGCCCTATACGCCCGAAAGCTATGATGCCGCCGCGCTTTTCATGCTGGCGATGCAGGCGGCGGAT AGTGTCGATCCGGCGGACTATGGCAAGCACATTCTCGATGTGGCCAATGCACCGGGCGAAAAGATCTATCCCGGCGATCT GGCCAAAGCCTTTGACATCCTGCGCGAAGGTGGCGAGATCGACTATGTCGGCGCGTCTGCGGTTGAATTGATCGGACCGG GTGAGTCCGCCGGAACCTACCGCATGATCGAAGTACAGGACGGCGAAAACGTCACCATCGGCTTCAAGTAA
Upstream 100 bases:
>100_bases TGCAGGAACGTCGGGCGATCCGGCCAAAACCGCTTTCAATTGGAAAATAGGGCGCATAATCTGCAAGGCGAACGCCAAGT TCCAACATGGGAGATGAACA
Downstream 100 bases:
>100_bases AAATCCGTTTGATATGAAAACAGCCCGGTGTCGCTGATGCCGGGCTGTTTTTGAACGCTGCAGGAAAGCTGGGAAGATGC AAGGCACAGGCATGATCGTC
Product: branched-chain amino acid ABC transporter, periplasmic substrate-binding protein
Products: ADP; phosphate; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 396; Mature: 396
Protein sequence:
>396_residues MKKLLMATTAAALIATTALADDTKSEVTLGVLFGFTGPIESLTGPMAAGAELAMAEATESGKFLDSATVTSIRADTGCID NGLSTSNGERLIAEGINGLIGGDCSGVTGAILQNVAIPNGMVMISPSATSPGLTTVEDNDLFFRTAPSDAREGQVMAEIL QERGVKSIALTYTNNDYGKGLADAIQSNFESIGGEVTIVAAHEDGKADYSAEMGALASAGGDILVVAGYLDQGGLGIINA ALDTGAFDTFGLPGGMIGDSLPANVGSALNGSYGQIAGSGGEGIEKLKALSGDAFDATSPYTPESYDAAALFMLAMQAAD SVDPADYGKHILDVANAPGEKIYPGDLAKAFDILREGGEIDYVGASAVELIGPGESAGTYRMIEVQDGENVTIGFK
Sequences:
>Translated_396_residues MKKLLMATTAAALIATTALADDTKSEVTLGVLFGFTGPIESLTGPMAAGAELAMAEATESGKFLDSATVTSIRADTGCID NGLSTSNGERLIAEGINGLIGGDCSGVTGAILQNVAIPNGMVMISPSATSPGLTTVEDNDLFFRTAPSDAREGQVMAEIL QERGVKSIALTYTNNDYGKGLADAIQSNFESIGGEVTIVAAHEDGKADYSAEMGALASAGGDILVVAGYLDQGGLGIINA ALDTGAFDTFGLPGGMIGDSLPANVGSALNGSYGQIAGSGGEGIEKLKALSGDAFDATSPYTPESYDAAALFMLAMQAAD SVDPADYGKHILDVANAPGEKIYPGDLAKAFDILREGGEIDYVGASAVELIGPGESAGTYRMIEVQDGENVTIGFK >Mature_396_residues MKKLLMATTAAALIATTALADDTKSEVTLGVLFGFTGPIESLTGPMAAGAELAMAEATESGKFLDSATVTSIRADTGCID NGLSTSNGERLIAEGINGLIGGDCSGVTGAILQNVAIPNGMVMISPSATSPGLTTVEDNDLFFRTAPSDAREGQVMAEIL QERGVKSIALTYTNNDYGKGLADAIQSNFESIGGEVTIVAAHEDGKADYSAEMGALASAGGDILVVAGYLDQGGLGIINA ALDTGAFDTFGLPGGMIGDSLPANVGSALNGSYGQIAGSGGEGIEKLKALSGDAFDATSPYTPESYDAAALFMLAMQAAD SVDPADYGKHILDVANAPGEKIYPGDLAKAFDILREGGEIDYVGASAVELIGPGESAGTYRMIEVQDGENVTIGFK
Specific function: Component of an amino-acid transport system (Potential) [H]
COG id: COG0683
COG function: function code E; ABC-type branched-chain amino acid transport systems, periplasmic component
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the leucine-binding protein family [H]
Homologues:
Organism=Escherichia coli, GI1789867, Length=330, Percent_Identity=26.969696969697, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI48994941, Length=343, Percent_Identity=26.530612244898, Blast_Score=78, Evalue=8e-16,
Paralogues:
None
Copy number: 240 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001828 - InterPro: IPR000709 [H]
Pfam domain/function: PF01094 ANF_receptor [H]
EC number: NA
Molecular weight: Translated: 40139; Mature: 40139
Theoretical pI: Translated: 3.84; Mature: 3.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLLMATTAAALIATTALADDTKSEVTLGVLFGFTGPIESLTGPMAAGAELAMAEATES CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHCCCHHCCCHHHHHHHCCC GKFLDSATVTSIRADTGCIDNGLSTSNGERLIAEGINGLIGGDCSGVTGAILQNVAIPNG CCEECCHHHEEEECCCCCCCCCCCCCCCCEEHHHCCCCCCCCCCCCHHHHHHHHHCCCCC MVMISPSATSPGLTTVEDNDLFFRTAPSDAREGQVMAEILQERGVKSIALTYTNNDYGKG EEEEECCCCCCCCEEEECCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCH LADAIQSNFESIGGEVTIVAAHEDGKADYSAEMGALASAGGDILVVAGYLDQGGLGIINA HHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCEEEEE ALDTGAFDTFGLPGGMIGDSLPANVGSALNGSYGQIAGSGGEGIEKLKALSGDAFDATSP HHCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCC YTPESYDAAALFMLAMQAADSVDPADYGKHILDVANAPGEKIYPGDLAKAFDILREGGEI CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCE DYVGASAVELIGPGESAGTYRMIEVQDGENVTIGFK EEECCCEEEEECCCCCCCCEEEEEEECCCEEEEEEC >Mature Secondary Structure MKKLLMATTAAALIATTALADDTKSEVTLGVLFGFTGPIESLTGPMAAGAELAMAEATES CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHCCCHHCCCHHHHHHHCCC GKFLDSATVTSIRADTGCIDNGLSTSNGERLIAEGINGLIGGDCSGVTGAILQNVAIPNG CCEECCHHHEEEECCCCCCCCCCCCCCCCEEHHHCCCCCCCCCCCCHHHHHHHHHCCCCC MVMISPSATSPGLTTVEDNDLFFRTAPSDAREGQVMAEILQERGVKSIALTYTNNDYGKG EEEEECCCCCCCCEEEECCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCH LADAIQSNFESIGGEVTIVAAHEDGKADYSAEMGALASAGGDILVVAGYLDQGGLGIINA HHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCEEEEE ALDTGAFDTFGLPGGMIGDSLPANVGSALNGSYGQIAGSGGEGIEKLKALSGDAFDATSP HHCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCC YTPESYDAAALFMLAMQAADSVDPADYGKHILDVANAPGEKIYPGDLAKAFDILREGGEI CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCE DYVGASAVELIGPGESAGTYRMIEVQDGENVTIGFK EEECCCEEEEECCCCCCCCEEEEEEECCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11756688 [H]