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The map label for this gene is gid

Identifier: 110679839

GI number: 110679839

Start: 2493096

End: 2494448

Strand: Reverse

Name: gid

Synonym: RD1_2610

Alternate gene names: 110679839

Gene position: 2494448-2493096 (Counterclockwise)

Preceding gene: 110679841

Following gene: 110679838

Centisome position: 60.35

GC content: 58.91

Gene sequence:

>1353_bases
ATGACACAGACATTACATATCGTTGGGGGCGGCATGGCCGGGTCCGAAGCCGCCTGGCAGGCGGCTGAAATGGGCGTGGA
CGTGGTGCTGCATGAGATGCGGCCAAAAGTGGGCACATTTGCCCATCAAACCGGGTTATTGGGCGAGATGGTGTGCTCCA
ACTCTTTCCGCTCAGACGATGATGAGCAGAACGCCGTGGGCTTGCTGCATTGGGAAATGCGGGCGGCGGGCGGTCTGATC
ATGCGGATGGCCGACAAACACCGGCTGCCTGCGGGCGGCGCCCTTGCGGTTGACCGGGACCTTTTCGCGCAATCAGTCAC
GGACACGCTGACCGCCCACCCGCGGATCACCATTGAATACGGCGAAATCTCGGAATTGCCCGCGTCCGGACAGTGGATTT
TTGCGACAGGGCCTTTGACATCCTCGAAACTGAGCGATGCAATCGCTGCGCAAACCGGTGGTGCGGCGCTCGCCTTTTTC
GACGCAATCGCGCCCATTGTGTATTTCGACAGTATCGACATGAGCCGTGCCTGGATGCAGTCGCGCTATGACAAGGGCGA
GACCGAAGAGGAGCGCACCGCCTATCTGAATTGCCCGATGGACAAGGACCAATACGAGGCCTTCATCGACGCCCTTCTGG
CAGCAGACAAAACCGAGTTCAAAGAGGGTGAGACGGCGGATTACTTCGATGGCTGCCTGCCCATCGAAGTCATGGCCGAA
CGGGGGCGCGAAACCTTGCGCTTTGGCCCGATGAAGCCGGTTGGTCTGACCAATCCACATCAGCCGGATGTGAAACCCTA
TGCTGTTGTGCAGCTGCGCCGGGATAACAAGCTGGGCACGCTCTATAATATCGTCGGGTTTCAGACCAAGATGAAGTACG
GTGCGCAAGCGGCTGTTTTCAAAACCATTCCCGGACTTGAGAATGCGAGTTTTGCGCGGCTTGGCGGCATTCATCGCAAT
ACGTTTTTGAATGCGCCGACCTTGCTGGATGAACAGATGCGGTTGCGCTCAAGGCCCAATATCCGCTTTGCCGGTCAGAT
CACAGGTGTCGAAGGCTATGTTGAATCCGCTGCGATGGGATTGCTGGCCGGACGTTTGGCAGCGGCCGAGATACTGGGCA
TTTCCCTGTCGGCCCCGGCGGATACGACCGCAACGGGCGCCTTGATCACCCACATCTCGGGTGGTGCCGAGGCCAAGACC
TTTCAGCCGATGAACGTCAACTTCGGGCTTTTCCCGCCGGTTGAGGGTTTGAAAGGCGGGCGTCGCGGGCGCAAGGACCG
GTACAAAGCCTATACGGACCGGGCAAAAAGGGACTGGCAGAACTGGCTCGAAGCCGTGAAGGAACCGGCGTAA

Upstream 100 bases:

>100_bases
CAAGGTCACACCTCATCAAGGACCACAAATTTGCGCGCGAAAAGCCGGGCGTTGCAGGCTTTAGGTTGCGGTGGCTGGGC
GCCTCGCTTACATCCGCATC

Downstream 100 bases:

>100_bases
GGCTGGACGCTCGGCGCAAAGCACTCTACTTTTGCGATATGACGGATGGATTTCTGACGAAGGCCTATGCTGCGCGTGAC
GCAGGCGACACCCGCGCGCT

Product: tRNA (uracil-5-)-methyltransferase Gid

Products: NA

Alternate protein names: Folate-dependent tRNA (uracil-5-)-methyltransferase; Folate-dependent tRNA(M-5-U54)-methyltransferase

Number of amino acids: Translated: 450; Mature: 449

Protein sequence:

>450_residues
MTQTLHIVGGGMAGSEAAWQAAEMGVDVVLHEMRPKVGTFAHQTGLLGEMVCSNSFRSDDDEQNAVGLLHWEMRAAGGLI
MRMADKHRLPAGGALAVDRDLFAQSVTDTLTAHPRITIEYGEISELPASGQWIFATGPLTSSKLSDAIAAQTGGAALAFF
DAIAPIVYFDSIDMSRAWMQSRYDKGETEEERTAYLNCPMDKDQYEAFIDALLAADKTEFKEGETADYFDGCLPIEVMAE
RGRETLRFGPMKPVGLTNPHQPDVKPYAVVQLRRDNKLGTLYNIVGFQTKMKYGAQAAVFKTIPGLENASFARLGGIHRN
TFLNAPTLLDEQMRLRSRPNIRFAGQITGVEGYVESAAMGLLAGRLAAAEILGISLSAPADTTATGALITHISGGAEAKT
FQPMNVNFGLFPPVEGLKGGRRGRKDRYKAYTDRAKRDWQNWLEAVKEPA

Sequences:

>Translated_450_residues
MTQTLHIVGGGMAGSEAAWQAAEMGVDVVLHEMRPKVGTFAHQTGLLGEMVCSNSFRSDDDEQNAVGLLHWEMRAAGGLI
MRMADKHRLPAGGALAVDRDLFAQSVTDTLTAHPRITIEYGEISELPASGQWIFATGPLTSSKLSDAIAAQTGGAALAFF
DAIAPIVYFDSIDMSRAWMQSRYDKGETEEERTAYLNCPMDKDQYEAFIDALLAADKTEFKEGETADYFDGCLPIEVMAE
RGRETLRFGPMKPVGLTNPHQPDVKPYAVVQLRRDNKLGTLYNIVGFQTKMKYGAQAAVFKTIPGLENASFARLGGIHRN
TFLNAPTLLDEQMRLRSRPNIRFAGQITGVEGYVESAAMGLLAGRLAAAEILGISLSAPADTTATGALITHISGGAEAKT
FQPMNVNFGLFPPVEGLKGGRRGRKDRYKAYTDRAKRDWQNWLEAVKEPA
>Mature_449_residues
TQTLHIVGGGMAGSEAAWQAAEMGVDVVLHEMRPKVGTFAHQTGLLGEMVCSNSFRSDDDEQNAVGLLHWEMRAAGGLIM
RMADKHRLPAGGALAVDRDLFAQSVTDTLTAHPRITIEYGEISELPASGQWIFATGPLTSSKLSDAIAAQTGGAALAFFD
AIAPIVYFDSIDMSRAWMQSRYDKGETEEERTAYLNCPMDKDQYEAFIDALLAADKTEFKEGETADYFDGCLPIEVMAER
GRETLRFGPMKPVGLTNPHQPDVKPYAVVQLRRDNKLGTLYNIVGFQTKMKYGAQAAVFKTIPGLENASFARLGGIHRNT
FLNAPTLLDEQMRLRSRPNIRFAGQITGVEGYVESAAMGLLAGRLAAAEILGISLSAPADTTATGALITHISGGAEAKTF
QPMNVNFGLFPPVEGLKGGRRGRKDRYKAYTDRAKRDWQNWLEAVKEPA

Specific function: Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs

COG id: COG1206

COG function: function code J; NAD(FAD)-utilizing enzyme possibly involved in translation

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MnmG family. TrmFO subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRMFO_ROSDO (Q166D3)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_682846.1
- ProteinModelPortal:   Q166D3
- SMR:   Q166D3
- STRING:   Q166D3
- GeneID:   4194970
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_2610
- NMPDR:   fig|375451.6.peg.2425
- eggNOG:   COG1206
- HOGENOM:   HBG285041
- OMA:   FEGCLPI
- ProtClustDB:   PRK05335
- BioCyc:   RDEN375451:RD1_2610-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01037
- InterPro:   IPR004417
- InterPro:   IPR002218
- TIGRFAMs:   TIGR00137

Pfam domain/function: PF01134 GIDA

EC number: =2.1.1.74

Molecular weight: Translated: 49029; Mature: 48898

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: PS01280 GIDA_1; PS01281 GIDA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQTLHIVGGGMAGSEAAWQAAEMGVDVVLHEMRPKVGTFAHQTGLLGEMVCSNSFRSDD
CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHCCCCCCCC
DEQNAVGLLHWEMRAAGGLIMRMADKHRLPAGGALAVDRDLFAQSVTDTLTAHPRITIEY
CCCCCEEEEEEEHHHCCCEEEEEHHHCCCCCCCCEEECHHHHHHHHHHHHCCCCEEEEEE
GEISELPASGQWIFATGPLTSSKLSDAIAAQTGGAALAFFDAIAPIVYFDSIDMSRAWMQ
CCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHEECCCCHHHHHHH
SRYDKGETEEERTAYLNCPMDKDQYEAFIDALLAADKTEFKEGETADYFDGCLPIEVMAE
HHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHCCCCCCCHHHCCCCHHHHHHH
RGRETLRFGPMKPVGLTNPHQPDVKPYAVVQLRRDNKLGTLYNIVGFQTKMKYGAQAAVF
CCCHHEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHH
KTIPGLENASFARLGGIHRNTFLNAPTLLDEQMRLRSRPNIRFAGQITGVEGYVESAAMG
HHCCCCCCCCHHHHCCCHHHHCCCCCHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHH
LLAGRLAAAEILGISLSAPADTTATGALITHISGGAEAKTFQPMNVNFGLFPPVEGLKGG
HHHHHHHHHHHHEEEECCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCHHHCCCC
RRGRKDRYKAYTDRAKRDWQNWLEAVKEPA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TQTLHIVGGGMAGSEAAWQAAEMGVDVVLHEMRPKVGTFAHQTGLLGEMVCSNSFRSDD
CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHCCCCCCCC
DEQNAVGLLHWEMRAAGGLIMRMADKHRLPAGGALAVDRDLFAQSVTDTLTAHPRITIEY
CCCCCEEEEEEEHHHCCCEEEEEHHHCCCCCCCCEEECHHHHHHHHHHHHCCCCEEEEEE
GEISELPASGQWIFATGPLTSSKLSDAIAAQTGGAALAFFDAIAPIVYFDSIDMSRAWMQ
CCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHEECCCCHHHHHHH
SRYDKGETEEERTAYLNCPMDKDQYEAFIDALLAADKTEFKEGETADYFDGCLPIEVMAE
HHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHCCCCCCCHHHCCCCHHHHHHH
RGRETLRFGPMKPVGLTNPHQPDVKPYAVVQLRRDNKLGTLYNIVGFQTKMKYGAQAAVF
CCCHHEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHH
KTIPGLENASFARLGGIHRNTFLNAPTLLDEQMRLRSRPNIRFAGQITGVEGYVESAAMG
HHCCCCCCCCHHHHCCCHHHHCCCCCHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHH
LLAGRLAAAEILGISLSAPADTTATGALITHISGGAEAKTFQPMNVNFGLFPPVEGLKGG
HHHHHHHHHHHHEEEECCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCHHHCCCC
RRGRKDRYKAYTDRAKRDWQNWLEAVKEPA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA