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The map label for this gene is secF [H]

Identifier: 110679781

GI number: 110679781

Start: 2434880

End: 2435860

Strand: Direct

Name: secF [H]

Synonym: RD1_2545

Alternate gene names: 110679781

Gene position: 2434880-2435860 (Clockwise)

Preceding gene: 110679780

Following gene: 110679782

Centisome position: 58.91

GC content: 56.27

Gene sequence:

>981_bases
ATGCGTCTGCGTCTGGTTAAACAGAATACCAACTTCGATTTCTTCAAGCGCTGGAAACTGTGGCTGGGGATTTCCGGCCT
GATGATGGTCGTGGCCTTTGTTTCCTTCTTGTTGCAGGGCCTGAACTACGGCATCGACTTTCGCGGCGGCACAACCATCA
GGACGGAAAGCACGCAGCCGGTTGATATCGGCGTTTATCGCGAAGCGCTGGCCGCACTGGAACTGGGTGATATTTCCATC
ACCGAGGTTTTTGACCCGCAATTCGAAGCCGACCAGAATGTCGCCATGATCCGCATCGAGGCGCAGGAGGGTGGCGAGGC
GGTCGAGGGCCAGCTGATCAGTGACATCGGTGCCGCGCTTCAGGCGGCGGATCCGGGGCTGAAACTGCCCTTTGCCTCGG
TTGAATCGGTGGGGCCAAAAGTTTCGGGTGAGTTGATCCAGACCGCTGTCATTGCGGTGGTTCTGGCTATCGGCGCGGTA
CTGATTTACATCTGGCTGCGCTTTGAATGGCAGTTCGCAGCCGGAGCGGTGCTCGCGCTTGTGCATGACGTCATTCTGAC
AATCGGCGTCTTTTCCGAGCTTCAGATCCGGTTCGATCTGGCCATCATCGCCGCCTTGCTGACCATCGTGGGCTACTCTC
TGAACGATACGGTCGTTGTTTTCGACCGGGTGCGCGAGAACCTGCGCAAATACAAGAAACGCCCGCTCAATGAAGTTCTG
AATATCTCCATCAACGAAACACTGAGCCGGACCTTCATGACATCGGTGACGACGCTTCTGGCGTTGATCGCACTCTTCGT
GCTGGGCGGGGATGTGATCCGGGGCTTCGTTTTTGCGATGATCTGGGGAGTCATTGTCGGGACCTACAGTTCGATATTTG
TTGCCTCGGCTGCCTTGCTCTATCTTGGGGTCAAGCGCGACTGGTCAAAACCGGACGCCAATTCGGGCAATCAATACGCC
AATATCGACCCCAAACCCTGA

Upstream 100 bases:

>100_bases
CTCGGGATCCTCACGTCTGTCTTTACGGCGATCTTTGTCACGCGGTTGATGATCGTTATCTGGTTCGAGCGCAAGCGCCC
GAAGAAAATCGAGGTCTGAT

Downstream 100 bases:

>100_bases
CGACAGGCACGCCATGCGACTGAACGAAATCCGCTTTACAGATGCCAAACCGATCGAAGGCTACGGGCCGGGTTTCTTCC
GCATCGGGGGCGAGGTGATC

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MRLRLVKQNTNFDFFKRWKLWLGISGLMMVVAFVSFLLQGLNYGIDFRGGTTIRTESTQPVDIGVYREALAALELGDISI
TEVFDPQFEADQNVAMIRIEAQEGGEAVEGQLISDIGAALQAADPGLKLPFASVESVGPKVSGELIQTAVIAVVLAIGAV
LIYIWLRFEWQFAAGAVLALVHDVILTIGVFSELQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKYKKRPLNEVL
NISINETLSRTFMTSVTTLLALIALFVLGGDVIRGFVFAMIWGVIVGTYSSIFVASAALLYLGVKRDWSKPDANSGNQYA
NIDPKP

Sequences:

>Translated_326_residues
MRLRLVKQNTNFDFFKRWKLWLGISGLMMVVAFVSFLLQGLNYGIDFRGGTTIRTESTQPVDIGVYREALAALELGDISI
TEVFDPQFEADQNVAMIRIEAQEGGEAVEGQLISDIGAALQAADPGLKLPFASVESVGPKVSGELIQTAVIAVVLAIGAV
LIYIWLRFEWQFAAGAVLALVHDVILTIGVFSELQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKYKKRPLNEVL
NISINETLSRTFMTSVTTLLALIALFVLGGDVIRGFVFAMIWGVIVGTYSSIFVASAALLYLGVKRDWSKPDANSGNQYA
NIDPKP
>Mature_326_residues
MRLRLVKQNTNFDFFKRWKLWLGISGLMMVVAFVSFLLQGLNYGIDFRGGTTIRTESTQPVDIGVYREALAALELGDISI
TEVFDPQFEADQNVAMIRIEAQEGGEAVEGQLISDIGAALQAADPGLKLPFASVESVGPKVSGELIQTAVIAVVLAIGAV
LIYIWLRFEWQFAAGAVLALVHDVILTIGVFSELQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKYKKRPLNEVL
NISINETLSRTFMTSVTTLLALIALFVLGGDVIRGFVFAMIWGVIVGTYSSIFVASAALLYLGVKRDWSKPDANSGNQYA
NIDPKP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=297, Percent_Identity=40.4040404040404, Blast_Score=224, Evalue=6e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 35767; Mature: 35767

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLRLVKQNTNFDFFKRWKLWLGISGLMMVVAFVSFLLQGLNYGIDFRGGTTIRTESTQP
CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEECCCCC
VDIGVYREALAALELGDISITEVFDPQFEADQNVAMIRIEAQEGGEAVEGQLISDIGAAL
CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
QAADPGLKLPFASVESVGPKVSGELIQTAVIAVVLAIGAVLIYIWLRFEWQFAAGAVLAL
HHCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHDVILTIGVFSELQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKYKKRPLNEVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCHHHHH
NISINETLSRTFMTSVTTLLALIALFVLGGDVIRGFVFAMIWGVIVGTYSSIFVASAALL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLGVKRDWSKPDANSGNQYANIDPKP
HHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRLRLVKQNTNFDFFKRWKLWLGISGLMMVVAFVSFLLQGLNYGIDFRGGTTIRTESTQP
CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEECCCCC
VDIGVYREALAALELGDISITEVFDPQFEADQNVAMIRIEAQEGGEAVEGQLISDIGAAL
CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
QAADPGLKLPFASVESVGPKVSGELIQTAVIAVVLAIGAVLIYIWLRFEWQFAAGAVLAL
HHCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHDVILTIGVFSELQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKYKKRPLNEVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCHHHHH
NISINETLSRTFMTSVTTLLALIALFVLGGDVIRGFVFAMIWGVIVGTYSSIFVASAALL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLGVKRDWSKPDANSGNQYANIDPKP
HHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA