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The map label for this gene is secD [H]

Identifier: 110679780

GI number: 110679780

Start: 2433217

End: 2434878

Strand: Direct

Name: secD [H]

Synonym: RD1_2544

Alternate gene names: 110679780

Gene position: 2433217-2434878 (Clockwise)

Preceding gene: 110679779

Following gene: 110679781

Centisome position: 58.87

GC content: 59.87

Gene sequence:

>1662_bases
ATGCTGCAGATTGATCTTTGGAAACGGATCACGATCCTCTTGACATGTGTGGCCGGACTTTGGCTTGCGATGCCAAACCT
CTTTTACACGACCGTCGAGCAGCACAATGATGCGGTTCAGGCCATTGAACTCGGGGCGGACACGCCCGAAAACAACGCTT
TGCGCGCGCAGTGGCCGGAATGGATGCCTTCGGGTCTTGTGAACCTCGGGCTTGATCTGCGGGGCGGGGCGCATCTGCTG
GCCGAGGTGCGGGTGGCGGATGTCTATGCCAACCGGATGGAATCATATTGGCCGGAAATCCGGGATGCGCTGCGCCCGGA
GCGCGAGACCATCGGCACAATCCGGCTGCAACCCTCCCCAAGCGATGAGGTGCACGTCCGCATTTCGCAACCCGAAGGCA
TGCCGCGCGCGCTGGAAATCGTGCGTGGGCTGGCGCGGCCTATCCAGACGATCACGGGCGTGGGCGCCAATGACATCGAG
GTGCGCGCGGAGGGCGATCTGCTGATCGTCACCATGTCAGAGGCTGAAAAACTGGCCTCCGATGAGCGCACGGTCCAGCA
GAGCCTTGAGATCATTCGCAGGCGGATCGACGAGGTCGGCACGCGTGAACCCACGATCCAGCGCCAGGGGTCCGACCGCA
TTCTGATCCAGGTGCCGGGCATCGGTTCGGCGGCGGAACTCAAGGATATCATCGGAACCACCGCGCAATTGACGTTCAAT
CCGGTGGTCAGCCGTGGATCAGACGCCAATGCCAGCCCGGGTCTTGGCAACAAGCTTGTGCCGTCGCTGGATGAGCCCGG
CACGTACTACACGATCGAAGCCGCCGCCGTGGTCACGGGCGAAGAACTGGTGGATGCGCAGCCCGCCTTTGACCAGAACG
GCCGTCCTGCTGTCAATTTCAGGTTCAATACGACGGGCGCGCGGAAATTCGGGGATTATACGGCTGAAAACATCGGATCG
CCCTTTGCGATCGTCTTGGACAACGAGGTCGTTAGCGCGCCCACAATCCAGAGCCATATCCCCGGGGGGTCGGGCATCAT
TACGGGGCGCTTCACGGTCGAGGAATCAACCAATCTGGCCATTCTGTTGCGTGCAGGTGCGCTGCCTGCGGGTCTGGATT
TTCTCGAAGAGCGCACAATCGGCCCCGAACTCGGCCAAGACAGCATCGACGCAGGCAAGATCGCGACCATTGTCGCCTTT
CTGGGCGTGCTGGTCTTCATGTTCCTGAGTTACGGCATGTTCGGACTGTTTGCGAATGTGGCGCTGATCATCAACATTGG
TCTGATCTTTGGCCTGCTCAGTATGATAGGCGGCACACTGACCCTGCCGGGTATTGCGGGAATCGTGCTGACTGTCGGCA
TGGCGGTGGATGCGAATGTGCTGGTTTTTGAACGCATCCGGGAAGAGCTTAAAACCTCCAAAGGGCCGGCGCGTGCCATT
GAACTGGGCTATGAAAAAGCGCTCTCCGCCATTCTGGATGCGAACATCACGACCTTCATCACGGCGGTGATCCTCTTTGC
CATGGGGTCGGGGCCGGTACGCGGCTTTGCCATCACGCTGGGCCTCGGGATCCTCACGTCTGTCTTTACGGCGATCTTTG
TCACGCGGTTGATGATCGTTATCTGGTTCGAGCGCAAGCGCCCGAAGAAAATCGAGGTCTGA

Upstream 100 bases:

>100_bases
CGTCAAGGTCAGGGTGATCCAGAACACAATCGCGACCGTGGTCTCGAAAACGGAACCGGCGAAGTAAGACCGCCTTACAA
CGGCTTGAAAAGGCGTCACT

Downstream 100 bases:

>100_bases
TATGCGTCTGCGTCTGGTTAAACAGAATACCAACTTCGATTTCTTCAAGCGCTGGAAACTGTGGCTGGGGATTTCCGGCC
TGATGATGGTCGTGGCCTTT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 553; Mature: 553

Protein sequence:

>553_residues
MLQIDLWKRITILLTCVAGLWLAMPNLFYTTVEQHNDAVQAIELGADTPENNALRAQWPEWMPSGLVNLGLDLRGGAHLL
AEVRVADVYANRMESYWPEIRDALRPERETIGTIRLQPSPSDEVHVRISQPEGMPRALEIVRGLARPIQTITGVGANDIE
VRAEGDLLIVTMSEAEKLASDERTVQQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKDIIGTTAQLTFN
PVVSRGSDANASPGLGNKLVPSLDEPGTYYTIEAAAVVTGEELVDAQPAFDQNGRPAVNFRFNTTGARKFGDYTAENIGS
PFAIVLDNEVVSAPTIQSHIPGGSGIITGRFTVEESTNLAILLRAGALPAGLDFLEERTIGPELGQDSIDAGKIATIVAF
LGVLVFMFLSYGMFGLFANVALIINIGLIFGLLSMIGGTLTLPGIAGIVLTVGMAVDANVLVFERIREELKTSKGPARAI
ELGYEKALSAILDANITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLMIVIWFERKRPKKIEV

Sequences:

>Translated_553_residues
MLQIDLWKRITILLTCVAGLWLAMPNLFYTTVEQHNDAVQAIELGADTPENNALRAQWPEWMPSGLVNLGLDLRGGAHLL
AEVRVADVYANRMESYWPEIRDALRPERETIGTIRLQPSPSDEVHVRISQPEGMPRALEIVRGLARPIQTITGVGANDIE
VRAEGDLLIVTMSEAEKLASDERTVQQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKDIIGTTAQLTFN
PVVSRGSDANASPGLGNKLVPSLDEPGTYYTIEAAAVVTGEELVDAQPAFDQNGRPAVNFRFNTTGARKFGDYTAENIGS
PFAIVLDNEVVSAPTIQSHIPGGSGIITGRFTVEESTNLAILLRAGALPAGLDFLEERTIGPELGQDSIDAGKIATIVAF
LGVLVFMFLSYGMFGLFANVALIINIGLIFGLLSMIGGTLTLPGIAGIVLTVGMAVDANVLVFERIREELKTSKGPARAI
ELGYEKALSAILDANITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLMIVIWFERKRPKKIEV
>Mature_553_residues
MLQIDLWKRITILLTCVAGLWLAMPNLFYTTVEQHNDAVQAIELGADTPENNALRAQWPEWMPSGLVNLGLDLRGGAHLL
AEVRVADVYANRMESYWPEIRDALRPERETIGTIRLQPSPSDEVHVRISQPEGMPRALEIVRGLARPIQTITGVGANDIE
VRAEGDLLIVTMSEAEKLASDERTVQQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKDIIGTTAQLTFN
PVVSRGSDANASPGLGNKLVPSLDEPGTYYTIEAAAVVTGEELVDAQPAFDQNGRPAVNFRFNTTGARKFGDYTAENIGS
PFAIVLDNEVVSAPTIQSHIPGGSGIITGRFTVEESTNLAILLRAGALPAGLDFLEERTIGPELGQDSIDAGKIATIVAF
LGVLVFMFLSYGMFGLFANVALIINIGLIFGLLSMIGGTLTLPGIAGIVLTVGMAVDANVLVFERIREELKTSKGPARAI
ELGYEKALSAILDANITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLMIVIWFERKRPKKIEV

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=624, Percent_Identity=34.6153846153846, Blast_Score=306, Evalue=3e-84,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 59737; Mature: 59737

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQIDLWKRITILLTCVAGLWLAMPNLFYTTVEQHNDAVQAIELGADTPENNALRAQWPE
CCEEHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCC
WMPSGLVNLGLDLRGGAHLLAEVRVADVYANRMESYWPEIRDALRPERETIGTIRLQPSP
CCCCCHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
SDEVHVRISQPEGMPRALEIVRGLARPIQTITGVGANDIEVRAEGDLLIVTMSEAEKLAS
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCHHHHHHH
DERTVQQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKDIIGTTAQLTFN
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEC
PVVSRGSDANASPGLGNKLVPSLDEPGTYYTIEAAAVVTGEELVDAQPAFDQNGRPAVNF
HHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCHHHHCCCCCCCCCCCEEEEE
RFNTTGARKFGDYTAENIGSPFAIVLDNEVVSAPTIQSHIPGGSGIITGRFTVEESTNLA
EECCCCCCHHCCHHHHHCCCCEEEEECCCCCCCCCHHHCCCCCCEEEEEEEEEECCCCEE
ILLRAGALPAGLDFLEERTIGPELGQDSIDAGKIATIVAFLGVLVFMFLSYGMFGLFANV
EEEECCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALIINIGLIFGLLSMIGGTLTLPGIAGIVLTVGMAVDANVLVFERIREELKTSKGPARAI
HHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHH
ELGYEKALSAILDANITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLMIV
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IWFERKRPKKIEV
HHHCCCCCCCCCC
>Mature Secondary Structure
MLQIDLWKRITILLTCVAGLWLAMPNLFYTTVEQHNDAVQAIELGADTPENNALRAQWPE
CCEEHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCC
WMPSGLVNLGLDLRGGAHLLAEVRVADVYANRMESYWPEIRDALRPERETIGTIRLQPSP
CCCCCHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
SDEVHVRISQPEGMPRALEIVRGLARPIQTITGVGANDIEVRAEGDLLIVTMSEAEKLAS
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCHHHHHHH
DERTVQQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKDIIGTTAQLTFN
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEC
PVVSRGSDANASPGLGNKLVPSLDEPGTYYTIEAAAVVTGEELVDAQPAFDQNGRPAVNF
HHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCHHHHCCCCCCCCCCCEEEEE
RFNTTGARKFGDYTAENIGSPFAIVLDNEVVSAPTIQSHIPGGSGIITGRFTVEESTNLA
EECCCCCCHHCCHHHHHCCCCEEEEECCCCCCCCCHHHCCCCCCEEEEEEEEEECCCCEE
ILLRAGALPAGLDFLEERTIGPELGQDSIDAGKIATIVAFLGVLVFMFLSYGMFGLFANV
EEEECCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALIINIGLIFGLLSMIGGTLTLPGIAGIVLTVGMAVDANVLVFERIREELKTSKGPARAI
HHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHH
ELGYEKALSAILDANITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLMIV
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IWFERKRPKKIEV
HHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9175857 [H]