Click here to switch to the map view.

The map label for this gene is 110679681

Identifier: 110679681

GI number: 110679681

Start: 2320359

End: 2320928

Strand: Direct

Name: 110679681

Synonym: RD1_2436

Alternate gene names: NA

Gene position: 2320359-2320928 (Clockwise)

Preceding gene: 110679678

Following gene: 110679684

Centisome position: 56.14

GC content: 62.11

Gene sequence:

>570_bases
ATGCCCCTTGCCCGTTCAATCGCCGCGCTCTTCATCCTTGCCATTACAAGTGCATGCGCCGCAGTCACACCGCGCGGTGT
CATGGAAGCCGCGCGTCTCGACCCATTGAACACACCGCCACAGGAACTGGGCCTCGCGTTGAGTGTTCCAGACACGATTG
TGTTGAAAGACGGCGACGCCATGGTCAGGCTTGCCTTGTCGGTTGCAGGCGAAGCGTTGGTTGATGCCCGCGTGCCCCTG
TCTGTGCAGCGCGCTCCGGAGGCAATATTGGTCAGCGCATCGCAGGGCGAGGTCATCTATGCCGCTTCCCTCACGCCGCA
AAACGCCGCAATCCTTGCAGCCGCACAGGCCGAAACCCGGGCATTGCGCGCGGCGGGGACCCAAGGCGAAGGCATCTTTT
CAATCGCGGTGGTTGGCGGATGCCGAACAGGGGACCCGCTTGAGGCATTACCCGTCTCCACATGGCTGCGCACCAATCCA
TCCGCATCGTTTGTCCCGCTCACACGACGCATGGATGTCCTTGACGGGCTTGAAGGCGGCGGCGTGATGGTGCCACCATG
TGAAAGCTGA

Upstream 100 bases:

>100_bases
GCGCAGGGGCGCATCATCAATGAGTGTCATTTTAACCATTCCATCCTTCATGTTTTACATGATACATATAGCGTAAATCA
TTTAGCAAAGGAAAGACGAA

Downstream 100 bases:

>100_bases
CGACGACGGCGGCGCCTTCAGTCGAGGTCTTCGATCCAGGTTTTTGCCGCAACCGCACGCGGTAAACCAAGCGGGCCAAT
GGCCAGCATCGCTACCTGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MPLARSIAALFILAITSACAAVTPRGVMEAARLDPLNTPPQELGLALSVPDTIVLKDGDAMVRLALSVAGEALVDARVPL
SVQRAPEAILVSASQGEVIYAASLTPQNAAILAAAQAETRALRAAGTQGEGIFSIAVVGGCRTGDPLEALPVSTWLRTNP
SASFVPLTRRMDVLDGLEGGGVMVPPCES

Sequences:

>Translated_189_residues
MPLARSIAALFILAITSACAAVTPRGVMEAARLDPLNTPPQELGLALSVPDTIVLKDGDAMVRLALSVAGEALVDARVPL
SVQRAPEAILVSASQGEVIYAASLTPQNAAILAAAQAETRALRAAGTQGEGIFSIAVVGGCRTGDPLEALPVSTWLRTNP
SASFVPLTRRMDVLDGLEGGGVMVPPCES
>Mature_188_residues
PLARSIAALFILAITSACAAVTPRGVMEAARLDPLNTPPQELGLALSVPDTIVLKDGDAMVRLALSVAGEALVDARVPLS
VQRAPEAILVSASQGEVIYAASLTPQNAAILAAAQAETRALRAAGTQGEGIFSIAVVGGCRTGDPLEALPVSTWLRTNPS
ASFVPLTRRMDVLDGLEGGGVMVPPCES

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19337; Mature: 19205

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLARSIAALFILAITSACAAVTPRGVMEAARLDPLNTPPQELGLALSVPDTIVLKDGDA
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHCEEEECCCEEEEECCCH
MVRLALSVAGEALVDARVPLSVQRAPEAILVSASQGEVIYAASLTPQNAAILAAAQAETR
HHHHHHHHHCHHHECCCCCEECCCCCCEEEEECCCCCEEEEEECCCCCCEEEEECHHHHH
ALRAAGTQGEGIFSIAVVGGCRTGDPLEALPVSTWLRTNPSASFVPLTRRMDVLDGLEGG
HHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHEECCCCCCEEEHHHHHHHHCCCCCC
GVMVPPCES
CEECCCCCC
>Mature Secondary Structure 
PLARSIAALFILAITSACAAVTPRGVMEAARLDPLNTPPQELGLALSVPDTIVLKDGDA
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHCEEEECCCEEEEECCCH
MVRLALSVAGEALVDARVPLSVQRAPEAILVSASQGEVIYAASLTPQNAAILAAAQAETR
HHHHHHHHHCHHHECCCCCEECCCCCCEEEEECCCCCEEEEEECCCCCCEEEEECHHHHH
ALRAAGTQGEGIFSIAVVGGCRTGDPLEALPVSTWLRTNPSASFVPLTRRMDVLDGLEGG
HHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHEECCCCCCEEEHHHHHHHHCCCCCC
GVMVPPCES
CEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA