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The map label for this gene is pam

Identifier: 110679678

GI number: 110679678

Start: 2318557

End: 2319411

Strand: Direct

Name: pam

Synonym: RD1_2432

Alternate gene names: NA

Gene position: 2318557-2319411 (Clockwise)

Preceding gene: 110679677

Following gene: 110679681

Centisome position: 56.1

GC content: 60.94

Gene sequence:

>855_bases
ATGAGCGGCACGCGACACCAGATCGTCGTTGCATTGGGTGACACCCGCTACCGCGTGGATCGACCCTTTGGGACGTGGCC
GCAAACCGCCGGTAAGGTGTCGGATGTCGTCGTCCTGCGCGATGGCCGTGTCCTTGTGTTGCTGCGCAGCGACCCTTATG
TGGACCCGGATGGTCCGCGTGTCATCGTGCTGTCCTGCGACGGTGACTACCTTGGCGCATGGGGCGATCTTGACATCGCT
GATGCGCATTTGATGACCCCGGCGCCGGATGGGCGTCTTTTCATCGTCGACCGTGACATGCATGAAATCATCGTCTTTTC
CGCAGATGGACAGCGGGTCGGGGGGATTGGCACACGCGGGGCACCCGGTACGCCGTTCAATCACCCCACGGATGTGGCTT
TTGCGCCAAGCGGTGACTTTTATGTGTCAGATGGCTATGCTGGCTGGCATGTCCACCGTTTTGCCGGCGACGGCACGCAT
CTGGCCACGTGGGGTGCATTCGGCAGCGGTCGTGGCGAATTCCTCGAACCGCATTCCCTCTGGTGCCTGCCCGATGGTCG
CGTGGTTGTCGTGGACCGGTGCAATAATCGGCTTCAGGTATTTGATGCGGATGGCGTTTTTCTTGACGAATGGACTGGCT
TTCACCGGGCTGTTGGGATCTGGGGGGATGACGCAGGTGACATATTCGTTTCCGATCAGGTCCCAAGCCTGCATCGCATA
TCGCAGAACGGAACGCGCTTGGGGCGCGCGCGCCCGGTACTGAACGGGGCGCATGGGATCTTCGGATCGCCGGATGGCAC
GATCTATCTCGCAGAAGCCAATCCAAGCAGGGTGTCCCGTCTGACGCCGCTGTGA

Upstream 100 bases:

>100_bases
TCCTCGATTATGTTGCCGGTCATGACGATGTCTGGATCACGCGGCGGCTGGATATCGCCCATCATTGGGCCAAAACACAT
CCCTATTCCGGACCTCTTGG

Downstream 100 bases:

>100_bases
CAGCCGTACCTCCCGCTGTGCCGTTGCATCCTTTGTACGCAGGCCAGCGTTGCCCGCTAAACAACGCTTGAGGCGCGCAG
AGGCAGGTCCGGCGCAAGGG

Product: peptidylglycine alpha-amidating monooxygenase, putative

Products: NA

Alternate protein names: NHL Repeat Containing Protein; SMP-30/Gluconolaconase/LRE Domain Protein; NHL Repeat Protein; Peptidylamidoglycolate Lyase; Peptidylglycine Alpha-Amidating Monooxygenase; PA14 Domain-Containing Protein; PKD Domain Containing Protein; Cell Surface Protein; ABC Transporter Related Protein; Surface Layer Protein; Ring Finger

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MSGTRHQIVVALGDTRYRVDRPFGTWPQTAGKVSDVVVLRDGRVLVLLRSDPYVDPDGPRVIVLSCDGDYLGAWGDLDIA
DAHLMTPAPDGRLFIVDRDMHEIIVFSADGQRVGGIGTRGAPGTPFNHPTDVAFAPSGDFYVSDGYAGWHVHRFAGDGTH
LATWGAFGSGRGEFLEPHSLWCLPDGRVVVVDRCNNRLQVFDADGVFLDEWTGFHRAVGIWGDDAGDIFVSDQVPSLHRI
SQNGTRLGRARPVLNGAHGIFGSPDGTIYLAEANPSRVSRLTPL

Sequences:

>Translated_284_residues
MSGTRHQIVVALGDTRYRVDRPFGTWPQTAGKVSDVVVLRDGRVLVLLRSDPYVDPDGPRVIVLSCDGDYLGAWGDLDIA
DAHLMTPAPDGRLFIVDRDMHEIIVFSADGQRVGGIGTRGAPGTPFNHPTDVAFAPSGDFYVSDGYAGWHVHRFAGDGTH
LATWGAFGSGRGEFLEPHSLWCLPDGRVVVVDRCNNRLQVFDADGVFLDEWTGFHRAVGIWGDDAGDIFVSDQVPSLHRI
SQNGTRLGRARPVLNGAHGIFGSPDGTIYLAEANPSRVSRLTPL
>Mature_283_residues
SGTRHQIVVALGDTRYRVDRPFGTWPQTAGKVSDVVVLRDGRVLVLLRSDPYVDPDGPRVIVLSCDGDYLGAWGDLDIAD
AHLMTPAPDGRLFIVDRDMHEIIVFSADGQRVGGIGTRGAPGTPFNHPTDVAFAPSGDFYVSDGYAGWHVHRFAGDGTHL
ATWGAFGSGRGEFLEPHSLWCLPDGRVVVVDRCNNRLQVFDADGVFLDEWTGFHRAVGIWGDDAGDIFVSDQVPSLHRIS
QNGTRLGRARPVLNGAHGIFGSPDGTIYLAEANPSRVSRLTPL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI21070980, Length=228, Percent_Identity=32.0175438596491, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI293336314, Length=228, Percent_Identity=32.0175438596491, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI21070984, Length=228, Percent_Identity=32.0175438596491, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI21070982, Length=226, Percent_Identity=30.9734513274336, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI21070974, Length=226, Percent_Identity=30.9734513274336, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI84993742, Length=165, Percent_Identity=27.8787878787879, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI32454739, Length=120, Percent_Identity=32.5, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI32454737, Length=120, Percent_Identity=32.5, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI61098457, Length=224, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17553622, Length=231, Percent_Identity=28.1385281385281, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI221330419, Length=152, Percent_Identity=29.6052631578947, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24655386, Length=152, Percent_Identity=29.6052631578947, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI22024206, Length=152, Percent_Identity=29.6052631578947, Blast_Score=74, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30797; Mature: 30666

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS51125 NHL L=RR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGTRHQIVVALGDTRYRVDRPFGTWPQTAGKVSDVVVLRDGRVLVLLRSDPYVDPDGPR
CCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCE
VIVLSCDGDYLGAWGDLDIADAHLMTPAPDGRLFIVDRDMHEIIVFSADGQRVGGIGTRG
EEEEEECCCEECCCCCCCCCCEEEECCCCCCEEEEEECCCEEEEEEECCCCEECCCCCCC
APGTPFNHPTDVAFAPSGDFYVSDGYAGWHVHRFAGDGTHLATWGAFGSGRGEFLEPHSL
CCCCCCCCCCCEEECCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEE
WCLPDGRVVVVDRCNNRLQVFDADGVFLDEWTGFHRAVGIWGDDAGDIFVSDQVPSLHRI
EEECCCCEEEEECCCCEEEEEECCCEEEECCCCCEEEEEECCCCCCCEEEECCCCCHHHH
SQNGTRLGRARPVLNGAHGIFGSPDGTIYLAEANPSRVSRLTPL
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHCCCCC
>Mature Secondary Structure 
SGTRHQIVVALGDTRYRVDRPFGTWPQTAGKVSDVVVLRDGRVLVLLRSDPYVDPDGPR
CCCCEEEEEEECCCEEEEECCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCE
VIVLSCDGDYLGAWGDLDIADAHLMTPAPDGRLFIVDRDMHEIIVFSADGQRVGGIGTRG
EEEEEECCCEECCCCCCCCCCEEEECCCCCCEEEEEECCCEEEEEEECCCCEECCCCCCC
APGTPFNHPTDVAFAPSGDFYVSDGYAGWHVHRFAGDGTHLATWGAFGSGRGEFLEPHSL
CCCCCCCCCCCEEECCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEE
WCLPDGRVVVVDRCNNRLQVFDADGVFLDEWTGFHRAVGIWGDDAGDIFVSDQVPSLHRI
EEECCCCEEEEECCCCEEEEEECCCEEEECCCCCEEEEEECCCCCCCEEEECCCCCHHHH
SQNGTRLGRARPVLNGAHGIFGSPDGTIYLAEANPSRVSRLTPL
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA