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The map label for this gene is yulB [H]

Identifier: 110679665

GI number: 110679665

Start: 2305776

End: 2306549

Strand: Reverse

Name: yulB [H]

Synonym: RD1_2417

Alternate gene names: 110679665

Gene position: 2306549-2305776 (Counterclockwise)

Preceding gene: 110679679

Following gene: 110679664

Centisome position: 55.81

GC content: 59.3

Gene sequence:

>774_bases
TTGACGCACAGACACCAGCGCATCCTGGAGATCGTCAACAAACAAAGCATCGCAGACGTCGGCCAACTCTCGGATGCGCT
CGGCGTTTCCACAGTCACCATTCGCTCGGACCTTGATGCGCTGGACAAACGCTTGCTCCTGCGACGGGTCCGGGGGGGCG
CAATGGCCATGCAGGCCGCCCGTTTCGAGCGCCCGGTGGATGTACCGACGCATAGCTTTACCTCAGAGAAAGAGCGCATC
GGTGCTGTCGCCGCTGGCATGGTACGCAGCGGTGAAACCATTATCCTCGATGCAGGAACCACCACACTTGCCATGGCGAT
GGCCCTGCCCAAGGACATCGAGGACGTCGTGGTCATTACATCCAGCCTCGATATTGCGATTGCGCTTGAAAAACACCCCG
GCGCGACGGTTTTCGTAACAGGGGGTAAGCTTAAGAAATCGGGGCGAAATCCAAACTCCCGCTCCCTCGTGCCGCCTTTT
GCGGGGCTACTGCTGGATCACCTGAACGCCGATTTCGCCTACCTGTGCTGCGCAGGTATCGATGCAGAACGCGGCTTTAC
CAACGCGAACCTGGAAGAAGCAGAAGTGAAACGCTTCATGATTTCAGCCGCGCGGCGCTGCGTCATGCTGGCCGATCGGG
GCAAGATCGGGCACGTCGCCGGCGCGCGGATCGCCCCCATTCAGGATATCACAACACTCGTGACCGATCGCAAGGCGAAC
CCCACCGATGTGTCCGAACTGCAGAAATCGGGCCTGAAGGTTATTCTTGCCTGA

Upstream 100 bases:

>100_bases
AAAATGTGGCACTCGACGCGCCTTTTTGATATTTGCCATATTGAAATGAAATGCAAGTCTTCGAAAGTAAATCTGAATGG
ATAATCTGCATAATGCTCCT

Downstream 100 bases:

>100_bases
AATGAACTGCCGCTTTTTTGTGCGCGATGCTTCGAGGTCATCAACGGCAAAGAAATTTTCGGCCTTTTTTATTTTTTATC
TTGCGAAAGTATTCGAAGGT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MTHRHQRILEIVNKQSIADVGQLSDALGVSTVTIRSDLDALDKRLLLRRVRGGAMAMQAARFERPVDVPTHSFTSEKERI
GAVAAGMVRSGETIILDAGTTTLAMAMALPKDIEDVVVITSSLDIAIALEKHPGATVFVTGGKLKKSGRNPNSRSLVPPF
AGLLLDHLNADFAYLCCAGIDAERGFTNANLEEAEVKRFMISAARRCVMLADRGKIGHVAGARIAPIQDITTLVTDRKAN
PTDVSELQKSGLKVILA

Sequences:

>Translated_257_residues
MTHRHQRILEIVNKQSIADVGQLSDALGVSTVTIRSDLDALDKRLLLRRVRGGAMAMQAARFERPVDVPTHSFTSEKERI
GAVAAGMVRSGETIILDAGTTTLAMAMALPKDIEDVVVITSSLDIAIALEKHPGATVFVTGGKLKKSGRNPNSRSLVPPF
AGLLLDHLNADFAYLCCAGIDAERGFTNANLEEAEVKRFMISAARRCVMLADRGKIGHVAGARIAPIQDITTLVTDRKAN
PTDVSELQKSGLKVILA
>Mature_256_residues
THRHQRILEIVNKQSIADVGQLSDALGVSTVTIRSDLDALDKRLLLRRVRGGAMAMQAARFERPVDVPTHSFTSEKERIG
AVAAGMVRSGETIILDAGTTTLAMAMALPKDIEDVVVITSSLDIAIALEKHPGATVFVTGGKLKKSGRNPNSRSLVPPFA
GLLLDHLNADFAYLCCAGIDAERGFTNANLEEAEVKRFMISAARRCVMLADRGKIGHVAGARIAPIQDITTLVTDRKANP
TDVSELQKSGLKVILA

Specific function: Probable Repressor For The Aga Operon For N-Acetyl Galactosamine Transport And Metabolism. [C]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789519, Length=257, Percent_Identity=30.3501945525292, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI1787540, Length=256, Percent_Identity=29.6875, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI226510968, Length=254, Percent_Identity=31.8897637795276, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789059, Length=255, Percent_Identity=30.1960784313725, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI87082344, Length=257, Percent_Identity=29.9610894941634, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1790635, Length=257, Percent_Identity=28.0155642023346, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1789829, Length=247, Percent_Identity=27.9352226720648, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787063, Length=260, Percent_Identity=27.6923076923077, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788069, Length=236, Percent_Identity=27.5423728813559, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1789170, Length=243, Percent_Identity=26.3374485596708, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790753, Length=260, Percent_Identity=23.0769230769231, Blast_Score=74, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27575; Mature: 27444

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHRHQRILEIVNKQSIADVGQLSDALGVSTVTIRSDLDALDKRLLLRRVRGGAMAMQAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHH
RFERPVDVPTHSFTSEKERIGAVAAGMVRSGETIILDAGTTTLAMAMALPKDIEDVVVIT
HCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCEEEEE
SSLDIAIALEKHPGATVFVTGGKLKKSGRNPNSRSLVPPFAGLLLDHLNADFAYLCCAGI
CCCEEEEEEECCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECC
DAERGFTNANLEEAEVKRFMISAARRCVMLADRGKIGHVAGARIAPIQDITTLVTDRKAN
CHHCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCC
PTDVSELQKSGLKVILA
CCCHHHHHHCCCEEEEC
>Mature Secondary Structure 
THRHQRILEIVNKQSIADVGQLSDALGVSTVTIRSDLDALDKRLLLRRVRGGAMAMQAA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHH
RFERPVDVPTHSFTSEKERIGAVAAGMVRSGETIILDAGTTTLAMAMALPKDIEDVVVIT
HCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCEEEEE
SSLDIAIALEKHPGATVFVTGGKLKKSGRNPNSRSLVPPFAGLLLDHLNADFAYLCCAGI
CCCEEEEEEECCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECC
DAERGFTNANLEEAEVKRFMISAARRCVMLADRGKIGHVAGARIAPIQDITTLVTDRKAN
CHHCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCC
PTDVSELQKSGLKVILA
CCCHHHHHHCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]