Click here to switch to the map view.

The map label for this gene is potH [H]

Identifier: 110679662

GI number: 110679662

Start: 2302558

End: 2303511

Strand: Reverse

Name: potH [H]

Synonym: RD1_2413

Alternate gene names: 110679662

Gene position: 2303511-2302558 (Counterclockwise)

Preceding gene: 110679663

Following gene: 110679661

Centisome position: 55.73

GC content: 59.85

Gene sequence:

>954_bases
TTGCGCGGTGTATCCGGTCTGATGTCGGACGCAACAGCCTTCCAGCCCCCACCGAACGCGCGACTGGGCGAAGTCATTCT
CGACAAACTGGTATCCGGTCGGGGCATCTGGCCCGCCGTGCCCGCGATCATCGTTCTGATTGTCGTTGCCGTTGTCCCAT
TCATAATCCTGCTGTCCCTCGGATTTTCGGATATTGAGGTGGCCCGCGGCGCGATCGTGTCGCAAACCCTGTCGTTTTCC
CATCTGAGCAATGCGCTGAGCGACCCGCTCTACTGGATCACCTTTCAGCGTTCACTGGTGCTGGCGATCAACACCACTCT
GCTTTGCCTGCTGTTCGGCTATCCGGTTGCCTACCTGTTTCTGATTGGCGGCAAGTGGACGCGGCGGCTGATCCTCATCC
TGACCATCGCGCCCCTGCTGACCAGCGGGATCGTGCGCACCTATGCGTGGCTGGTGATCCTTGGCGGGCGCGGTGTGGTG
AATTCAACCCTGATGAGCCTTGGGCTGATCGACCAGCCCTTGCGCATCATGAACACGCATTGGGCCGTCCTGATCGGCAT
GGTACAGATCCACCTGCCCGTGATGATCCTTCCGCTGATCGCGGTGATGAGCCGCCATGAAGGTGGGCTGATGGAGGCTT
CGGCCAATCTGGGCGCATCCCGGCTCGGGACCCTACGCACGGTGATCCTGCCGCTCAGCGCACCGGGCATCGGCACGGGC
GCGGCCCTCGTCTTTACGCTCAGCTATACGACGTTTGTCGTACCTCAGCTATTGGGCGGCGGCAATTATCTGAACGCGGC
CACCATGATCTACGAACAGGTCGTCTTTTCACTGGAATGGAGCAAAGGATCCGTCAGTTCGCTGATCCTCATGGCCACCT
GCCTGATCGTCCTCGTGATCATCGCGATGCTGACGAATATCTTTACCCGCTGGACGAAAGGACGGGATGCATGA

Upstream 100 bases:

>100_bases
CGGATGGGACCACGATACAGGTCGCTGCCATGCGCCAGGAACGCACGCGCCCGTGGCAAGCCGGAGAGGTCGTAAGCCTA
TCGGTGATCGATCCGTCCTA

Downstream 100 bases:

>100_bases
TCAAAGCGCTGCGCACCTCTTCGCTCGGGGATATTCTGGGCATCGGTTTGGTCCTTTTCATCGCGGTGTTTTCGCTGATC
CTGCTGATCGCGCCGTCGAT

Product: putrescine ABC transporter, permease protein, putative

Products: ADP; phosphate; putrescine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MRGVSGLMSDATAFQPPPNARLGEVILDKLVSGRGIWPAVPAIIVLIVVAVVPFIILLSLGFSDIEVARGAIVSQTLSFS
HLSNALSDPLYWITFQRSLVLAINTTLLCLLFGYPVAYLFLIGGKWTRRLILILTIAPLLTSGIVRTYAWLVILGGRGVV
NSTLMSLGLIDQPLRIMNTHWAVLIGMVQIHLPVMILPLIAVMSRHEGGLMEASANLGASRLGTLRTVILPLSAPGIGTG
AALVFTLSYTTFVVPQLLGGGNYLNAATMIYEQVVFSLEWSKGSVSSLILMATCLIVLVIIAMLTNIFTRWTKGRDA

Sequences:

>Translated_317_residues
MRGVSGLMSDATAFQPPPNARLGEVILDKLVSGRGIWPAVPAIIVLIVVAVVPFIILLSLGFSDIEVARGAIVSQTLSFS
HLSNALSDPLYWITFQRSLVLAINTTLLCLLFGYPVAYLFLIGGKWTRRLILILTIAPLLTSGIVRTYAWLVILGGRGVV
NSTLMSLGLIDQPLRIMNTHWAVLIGMVQIHLPVMILPLIAVMSRHEGGLMEASANLGASRLGTLRTVILPLSAPGIGTG
AALVFTLSYTTFVVPQLLGGGNYLNAATMIYEQVVFSLEWSKGSVSSLILMATCLIVLVIIAMLTNIFTRWTKGRDA
>Mature_317_residues
MRGVSGLMSDATAFQPPPNARLGEVILDKLVSGRGIWPAVPAIIVLIVVAVVPFIILLSLGFSDIEVARGAIVSQTLSFS
HLSNALSDPLYWITFQRSLVLAINTTLLCLLFGYPVAYLFLIGGKWTRRLILILTIAPLLTSGIVRTYAWLVILGGRGVV
NSTLMSLGLIDQPLRIMNTHWAVLIGMVQIHLPVMILPLIAVMSRHEGGLMEASANLGASRLGTLRTVILPLSAPGIGTG
AALVFTLSYTTFVVPQLLGGGNYLNAATMIYEQVVFSLEWSKGSVSSLILMATCLIVLVIIAMLTNIFTRWTKGRDA

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine [H]

COG id: COG1176

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component I

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787080, Length=227, Percent_Identity=38.3259911894273, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1787369, Length=234, Percent_Identity=35.4700854700855, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787713, Length=271, Percent_Identity=28.7822878228782, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34108; Mature: 34108

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGVSGLMSDATAFQPPPNARLGEVILDKLVSGRGIWPAVPAIIVLIVVAVVPFIILLSL
CCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
GFSDIEVARGAIVSQTLSFSHLSNALSDPLYWITFQRSLVLAINTTLLCLLFGYPVAYLF
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
LIGGKWTRRLILILTIAPLLTSGIVRTYAWLVILGGRGVVNSTLMSLGLIDQPLRIMNTH
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCCHHHHHHH
WAVLIGMVQIHLPVMILPLIAVMSRHEGGLMEASANLGASRLGTLRTVILPLSAPGIGTG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHEEECCCCCCCCC
AALVFTLSYTTFVVPQLLGGGNYLNAATMIYEQVVFSLEWSKGSVSSLILMATCLIVLVI
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
IAMLTNIFTRWTKGRDA
HHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRGVSGLMSDATAFQPPPNARLGEVILDKLVSGRGIWPAVPAIIVLIVVAVVPFIILLSL
CCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
GFSDIEVARGAIVSQTLSFSHLSNALSDPLYWITFQRSLVLAINTTLLCLLFGYPVAYLF
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
LIGGKWTRRLILILTIAPLLTSGIVRTYAWLVILGGRGVVNSTLMSLGLIDQPLRIMNTH
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCCCCHHHHHHH
WAVLIGMVQIHLPVMILPLIAVMSRHEGGLMEASANLGASRLGTLRTVILPLSAPGIGTG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHEEECCCCCCCCC
AALVFTLSYTTFVVPQLLGGGNYLNAATMIYEQVVFSLEWSKGSVSSLILMATCLIVLVI
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
IAMLTNIFTRWTKGRDA
HHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; putrescine [Periplasm]; H2O [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8416922; 8905232; 9278503 [H]