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The map label for this gene is ycfQ [H]

Identifier: 110679611

GI number: 110679611

Start: 2252686

End: 2253282

Strand: Direct

Name: ycfQ [H]

Synonym: RD1_2356

Alternate gene names: 110679611

Gene position: 2252686-2253282 (Clockwise)

Preceding gene: 110679608

Following gene: 110679612

Centisome position: 54.5

GC content: 63.82

Gene sequence:

>597_bases
ATGCAGCAACCCGGACGCCCGAGGGAATTTGACCCCGATGAGACCCTGTCGAAAATCATGCATCTGTTCTGGGAACACGG
CTATGAGGCGACAGGGCTGAGCGACATCACAAAGGCCACGGGGCTGGGCAAGGCGAGCCTTTATGCGGCCTTTGGCAACA
AGCAGTCGATGTACCTCAAGGCGCTTGCACATTACGACGCCCGGATGGTGGAGGGGGCGGTGCGCATCCTGCGCGCGCCT
GACACGGCCCCGCTGGCGCGGATCGACGGGTTTCTTTCCGCGCCGCTCACCGCCCTGCGCGATCACGCCGACAGCCGTGG
CTGCTTCCTGTGCAACGCCTCGGCGGATCGCGCAGCACTCGATGCACAAACGGCAGCCCTCGTGCGCGCAGGCTATGACC
GGATGCGCCACGCCATCGCCCATGCGCTGAGCGAGGCACGCCCGGACATGACCCGGGACGCGCGCGCTCAACAGGCGCAA
CTGATCCTCACGGTCTATTCCGGCCTGCGCATCATGGCCCGCGCCGCCACAAACCCCGAAACCCTGCAACAGGCAAAAGA
CGCCGTCATGATAAACCTCGGAAACAAAACAGAATAA

Upstream 100 bases:

>100_bases
GGTAAAGCTGTGCGGCGTCAGTGCCGATGACCAACACCTAGAGATTACGGACCAATCGGTCAACAACTATCTGTTCACAG
CTTCGCGAGGACAATGACAC

Downstream 100 bases:

>100_bases
CGCGCAAGGGGGTGGGTTGCTCTGCCCCTGTGTGGTCCCTGCACCCTTCGGTTTCCGTGACTGCATTGAGGCCTGTTGCC
GCAGCGGGCAGCCAGCGCAC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MQQPGRPREFDPDETLSKIMHLFWEHGYEATGLSDITKATGLGKASLYAAFGNKQSMYLKALAHYDARMVEGAVRILRAP
DTAPLARIDGFLSAPLTALRDHADSRGCFLCNASADRAALDAQTAALVRAGYDRMRHAIAHALSEARPDMTRDARAQQAQ
LILTVYSGLRIMARAATNPETLQQAKDAVMINLGNKTE

Sequences:

>Translated_198_residues
MQQPGRPREFDPDETLSKIMHLFWEHGYEATGLSDITKATGLGKASLYAAFGNKQSMYLKALAHYDARMVEGAVRILRAP
DTAPLARIDGFLSAPLTALRDHADSRGCFLCNASADRAALDAQTAALVRAGYDRMRHAIAHALSEARPDMTRDARAQQAQ
LILTVYSGLRIMARAATNPETLQQAKDAVMINLGNKTE
>Mature_198_residues
MQQPGRPREFDPDETLSKIMHLFWEHGYEATGLSDITKATGLGKASLYAAFGNKQSMYLKALAHYDARMVEGAVRILRAP
DTAPLARIDGFLSAPLTALRDHADSRGCFLCNASADRAALDAQTAALVRAGYDRMRHAIAHALSEARPDMTRDARAQQAQ
LILTVYSGLRIMARAATNPETLQQAKDAVMINLGNKTE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=183, Percent_Identity=27.3224043715847, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI87082397, Length=183, Percent_Identity=27.8688524590164, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21642; Mature: 21642

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQPGRPREFDPDETLSKIMHLFWEHGYEATGLSDITKATGLGKASLYAAFGNKQSMYLK
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHH
ALAHYDARMVEGAVRILRAPDTAPLARIDGFLSAPLTALRDHADSRGCFLCNASADRAAL
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
DAQTAALVRAGYDRMRHAIAHALSEARPDMTRDARAQQAQLILTVYSGLRIMARAATNPE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
TLQQAKDAVMINLGNKTE
HHHHHHHEEEEECCCCCC
>Mature Secondary Structure
MQQPGRPREFDPDETLSKIMHLFWEHGYEATGLSDITKATGLGKASLYAAFGNKQSMYLK
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHCCCHHHHHH
ALAHYDARMVEGAVRILRAPDTAPLARIDGFLSAPLTALRDHADSRGCFLCNASADRAAL
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
DAQTAALVRAGYDRMRHAIAHALSEARPDMTRDARAQQAQLILTVYSGLRIMARAATNPE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
TLQQAKDAVMINLGNKTE
HHHHHHHEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]