| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110679602
Identifier: 110679602
GI number: 110679602
Start: 2246132
End: 2246716
Strand: Reverse
Name: 110679602
Synonym: RD1_2347
Alternate gene names: NA
Gene position: 2246716-2246132 (Counterclockwise)
Preceding gene: 110679603
Following gene: 110679601
Centisome position: 54.36
GC content: 61.2
Gene sequence:
>585_bases GTGCCGATTGCTTTATTTGCATTCACGGCTGGCATCGCCCTGCGTGGCATTCTGGTTCACTACCCGCACCGCGCGCTTGG AATGGGCAATGGCGTCACGTTGATACGCGCCGCACTGGTTGCGGTGCTTGCCGGGGCGGTCATGGCCCCGCACCCCGCAG GCTGGGTCGTGTTTGCGCTCGCCTGCGTGGCCTTTGCGCTGGATGGTCTGGACGGATGGCTTGCCCGCCGGTCCGGCCTT ACGTCTGCTTTCGGCGCGCGTTTTGACATGGAGATTGACGCGCTGCTCGCCGCCGTTCTGGCACTCATTCTGCTGAGCGA CGGTCACGTTGGCCTCGAAATCCTGTTCCTGGGCTTCACCCGTTATGCATTTGTCATCGCAAGCCTGTTTTTGGACCGAC TGCGCAGACCCCTGCCCGACAGCCTGCGACGCAAGACCATATGTGTTATACAAATTGCAGCGCTGATCGCATTGCTGTGC CCGCTGACGCCTCTGTGGCTGATGCCACCACTGTCGTGGGGCGCTGCGGTATTGCTGCTGTGCTCCTTTGCAACAGACAT ACGTTGGTTGCTGGGCCGTCCTTGA
Upstream 100 bases:
>100_bases CCGCATCGCGCCGGGTCCGCAGTCGCTGTTCGCGGTGCTGAGTCTTGCGCTGTTGGGGCCCGTTTCATTTGCTGCGCTGG CGATCTTTGGCAATCTCGCT
Downstream 100 bases:
>100_bases TGATAAAGATCATAAGCCTCGCACTTGCCGGTTTCACAGTTTTTCTGGCGCTCGTTCTGCCCAATCATCCGGGCACGATG TCGCTTTCGGCCCTCAACCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 194; Mature: 193
Protein sequence:
>194_residues MPIALFAFTAGIALRGILVHYPHRALGMGNGVTLIRAALVAVLAGAVMAPHPAGWVVFALACVAFALDGLDGWLARRSGL TSAFGARFDMEIDALLAAVLALILLSDGHVGLEILFLGFTRYAFVIASLFLDRLRRPLPDSLRRKTICVIQIAALIALLC PLTPLWLMPPLSWGAAVLLLCSFATDIRWLLGRP
Sequences:
>Translated_194_residues MPIALFAFTAGIALRGILVHYPHRALGMGNGVTLIRAALVAVLAGAVMAPHPAGWVVFALACVAFALDGLDGWLARRSGL TSAFGARFDMEIDALLAAVLALILLSDGHVGLEILFLGFTRYAFVIASLFLDRLRRPLPDSLRRKTICVIQIAALIALLC PLTPLWLMPPLSWGAAVLLLCSFATDIRWLLGRP >Mature_193_residues PIALFAFTAGIALRGILVHYPHRALGMGNGVTLIRAALVAVLAGAVMAPHPAGWVVFALACVAFALDGLDGWLARRSGLT SAFGARFDMEIDALLAAVLALILLSDGHVGLEILFLGFTRYAFVIASLFLDRLRRPLPDSLRRKTICVIQIAALIALLCP LTPLWLMPPLSWGAAVLLLCSFATDIRWLLGRP
Specific function: Unknown
COG id: COG0558
COG function: function code I; Phosphatidylglycerophosphate synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20809; Mature: 20678
Theoretical pI: Translated: 9.51; Mature: 9.51
Prosite motif: PS00379 CDP_ALCOHOL_P_TRANSF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIALFAFTAGIALRGILVHYPHRALGMGNGVTLIRAALVAVLAGAVMAPHPAGWVVFAL CCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH ACVAFALDGLDGWLARRSGLTSAFGARFDMEIDALLAAVLALILLSDGHVGLEILFLGFT HHHHHHHHCHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH RYAFVIASLFLDRLRRPLPDSLRRKTICVIQIAALIALLCPLTPLWLMPPLSWGAAVLLL HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHH CSFATDIRWLLGRP HHHHHHHHHHHCCC >Mature Secondary Structure PIALFAFTAGIALRGILVHYPHRALGMGNGVTLIRAALVAVLAGAVMAPHPAGWVVFAL CCHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH ACVAFALDGLDGWLARRSGLTSAFGARFDMEIDALLAAVLALILLSDGHVGLEILFLGFT HHHHHHHHCHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH RYAFVIASLFLDRLRRPLPDSLRRKTICVIQIAALIALLCPLTPLWLMPPLSWGAAVLLL HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHH CSFATDIRWLLGRP HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA