Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

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The map label for this gene is 110679486

Identifier: 110679486

GI number: 110679486

Start: 2116912

End: 2117511

Strand: Direct

Name: 110679486

Synonym: RD1_2215

Alternate gene names: NA

Gene position: 2116912-2117511 (Clockwise)

Preceding gene: 110679485

Following gene: 110679488

Centisome position: 51.22

GC content: 56.5

Gene sequence:

>600_bases
TTGTTTCTTGGTTTGGCCGTTGGCGTGGCACTTGCGGTGAGCACTGTGCCTGTCGCCGCTGCCGGAAATGTTGGCAGCGC
GTTTCTTGTGGCGCAAAAGCCGGCAAAGGCACCGTCCGGGTTTATCGGGCTGTGTGCGCGCTACGATTGGGTTTGTTCTG
CAACAAAAGCGCGCGGCAACGTAACCGCCGAGCATATTTCATTGGCAAAAACCATCAATCGAACGGTCAACCGCCAGGTC
AAGGAAATCGAGGATCTGCGCCAATATGGCAAGGAAGAGCACTGGGCGCTGCCCTCTGCGCGCGGCGGAGACTGCGAAGA
TCTCGTGTTGTTGAAAAAGAAAATGCTGGTGGAGCGTGGTGTTCCTTCGGACGCACTTTTGATCGCCACCGTTCTGGACC
GCAAACTCAACAGTCACGCGGTTCTGGTTATGCGCACAAAGGCGGGTGATCTCGTGCTCGACAATCTGACAAACAAGATC
AAGCCATGGAAAGAAACGGGCTACACGTTCCTGAAGCTTCAAAACCCCAAGTCGCTGAACCGGTGGGATGCCGTGCTGGC
CGGCGGTGTCATTTCTGACCGGCCTACTGCGTCGCGCTGA

Upstream 100 bases:

>100_bases
TCAGCAGAACCGTTCGGAAAAAGCAAATGCAACTCTGGCTGCGCGTCCGACCCCTTTCATCTCACGGCTTTTTCCCCAAC
CGCAAAACCCTGTGAAAGGG

Downstream 100 bases:

>100_bases
CAGTAGTTTTGCCATCGTGTGACGAAAAAAGCGCAGACAATCGAACGTTTGTCTGCGCCTTCCGGAGTTGTGATAGCGTC
GTGCGGTTTTTTAAAGGTGC

Product: hypothetical protein

Products: NA

Alternate protein names: Transglutaminase-Like Cysteine Peptidase BTLCP; Transglutaminase Family Protein Cysteine Peptidase Btlcp; Transglutaminase-Like Cysteine Peptidase; Periplasmic Protein-Like Protein; And 4.1 Domain Protein; Peptide Signal; Signal Peptide; Transglutaminase Cysteine Peptidase BTLCP; Transglutaminase-Like Protein; Bacterial Transglutaminase-Like Cysteine Peptidase

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MFLGLAVGVALAVSTVPVAAAGNVGSAFLVAQKPAKAPSGFIGLCARYDWVCSATKARGNVTAEHISLAKTINRTVNRQV
KEIEDLRQYGKEEHWALPSARGGDCEDLVLLKKKMLVERGVPSDALLIATVLDRKLNSHAVLVMRTKAGDLVLDNLTNKI
KPWKETGYTFLKLQNPKSLNRWDAVLAGGVISDRPTASR

Sequences:

>Translated_199_residues
MFLGLAVGVALAVSTVPVAAAGNVGSAFLVAQKPAKAPSGFIGLCARYDWVCSATKARGNVTAEHISLAKTINRTVNRQV
KEIEDLRQYGKEEHWALPSARGGDCEDLVLLKKKMLVERGVPSDALLIATVLDRKLNSHAVLVMRTKAGDLVLDNLTNKI
KPWKETGYTFLKLQNPKSLNRWDAVLAGGVISDRPTASR
>Mature_199_residues
MFLGLAVGVALAVSTVPVAAAGNVGSAFLVAQKPAKAPSGFIGLCARYDWVCSATKARGNVTAEHISLAKTINRTVNRQV
KEIEDLRQYGKEEHWALPSARGGDCEDLVLLKKKMLVERGVPSDALLIATVLDRKLNSHAVLVMRTKAGDLVLDNLTNKI
KPWKETGYTFLKLQNPKSLNRWDAVLAGGVISDRPTASR

Specific function: Unknown

COG id: COG3672

COG function: function code S; Predicted periplasmic protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21503; Mature: 21503

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLGLAVGVALAVSTVPVAAAGNVGSAFLVAQKPAKAPSGFIGLCARYDWVCSATKARGN
CCHHHHHHHHHHHHHCCEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCC
VTAEHISLAKTINRTVNRQVKEIEDLRQYGKEEHWALPSARGGDCEDLVLLKKKMLVERG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
VPSDALLIATVLDRKLNSHAVLVMRTKAGDLVLDNLTNKIKPWKETGYTFLKLQNPKSLN
CCCCHHHHHHHHHHCCCCCEEEEEEECCCCEEHHHHHHHCCCHHHCCEEEEEECCCCCCC
RWDAVLAGGVISDRPTASR
HHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MFLGLAVGVALAVSTVPVAAAGNVGSAFLVAQKPAKAPSGFIGLCARYDWVCSATKARGN
CCHHHHHHHHHHHHHCCEEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCC
VTAEHISLAKTINRTVNRQVKEIEDLRQYGKEEHWALPSARGGDCEDLVLLKKKMLVERG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
VPSDALLIATVLDRKLNSHAVLVMRTKAGDLVLDNLTNKIKPWKETGYTFLKLQNPKSLN
CCCCHHHHHHHHHHCCCCCEEEEEEECCCCEEHHHHHHHCCCHHHCCEEEEEECCCCCCC
RWDAVLAGGVISDRPTASR
HHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA