| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is Dml [H]
Identifier: 110679462
GI number: 110679462
Start: 2085574
End: 2086449
Strand: Direct
Name: Dml [H]
Synonym: RD1_2188
Alternate gene names: 110679462
Gene position: 2085574-2086449 (Clockwise)
Preceding gene: 110679461
Following gene: 110679469
Centisome position: 50.46
GC content: 60.84
Gene sequence:
>876_bases ATGACTGCTGCGAAAACGCTCCGTACCTTGCTGGCGCAGGATAAATGCCATGTGATGCCGTGTTGCTTTGATGCGCTCTC GGCCAAACTGATCGCGCAGGAGGGGTATGATCTGACCTTCATGTCGGGTTTTGCCGCCTCCGCCAGCCGGATCGGCGCGC CGGATCTCGGCCTGATGAGCTATGGTGAAGTCGTGGATCAGGCCCGCAACATCGCCACTGCCATCGACATTCCGCTGATC GGGGATGGCGATACGGGCTATGGCAATGCGATGAATGTGCGCCGCACGGTGACGGGGTTTGCGCAAGCCGGTTGCGCGTC GGTGATGATCGAAGACCAGCTTGCCCCGAAAAGATGCGGGCACACGCCGGGTAAGGCGGTTGTGCCACGACAAGAGGCAT ATGACAGGATCAAGGCGGCGGTGGATGCGCGCGATGCCCTGCGCGAAGACGGCGGCGATATCCTGATCCTTGCCCGCACG GATGCGCGTCATGAACACGGGCTGTCAGAGGCGATCGAACGGGCGGCAGTCTTTGCCGAACTCGGCGCCGATATCCTGTT CGTGGAGGCTCCTAAATCCATCGCAGAGATGCAGGATATCTGCTCAAACCTGCCCGGTCCCAAGATGGCGAATATCGTCG AAGGTGGGGAAACACCGGATTTGCCCAATGCGGCCCTGCATGACATCGGCTATTCCATCGCGGCCTATCCGCTGTCTCTG ATGGCGGCGGCGATGCAGGCGATGGTCACATCGTTGCGCGCGATGCGCGCGGATCAGCGGCCCGGATTGATGGATTTTGG CGAGTTGCGCAGCCGGATCGGGTTTGACGACTACTATGCGGCGTCGCAAGCCTATGCGTCCTCAAAGCGCGACTGA
Upstream 100 bases:
>100_bases CGCGGGGTCTGGCCGTTCCTGATGCTGATGCTGTTCACGGTTGGCATTCTTTATCTGGTGCCTGATCTGGCGCTTTATAT CCCGTTCAAATGGTGAAATC
Downstream 100 bases:
>100_bases GTATGCGTCGGGGTCGCCGGATGCGTGCTCACAAGTCCTTGACCAGCCTCAGGGCGTCGTAAATCGCCGCATGTGTGTTG CGGGCCGAAACCGCATCCCC
Product: carboxyvinyl-carboxyphosphonate phosphorylmutase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MTAAKTLRTLLAQDKCHVMPCCFDALSAKLIAQEGYDLTFMSGFAASASRIGAPDLGLMSYGEVVDQARNIATAIDIPLI GDGDTGYGNAMNVRRTVTGFAQAGCASVMIEDQLAPKRCGHTPGKAVVPRQEAYDRIKAAVDARDALREDGGDILILART DARHEHGLSEAIERAAVFAELGADILFVEAPKSIAEMQDICSNLPGPKMANIVEGGETPDLPNAALHDIGYSIAAYPLSL MAAAMQAMVTSLRAMRADQRPGLMDFGELRSRIGFDDYYAASQAYASSKRD
Sequences:
>Translated_291_residues MTAAKTLRTLLAQDKCHVMPCCFDALSAKLIAQEGYDLTFMSGFAASASRIGAPDLGLMSYGEVVDQARNIATAIDIPLI GDGDTGYGNAMNVRRTVTGFAQAGCASVMIEDQLAPKRCGHTPGKAVVPRQEAYDRIKAAVDARDALREDGGDILILART DARHEHGLSEAIERAAVFAELGADILFVEAPKSIAEMQDICSNLPGPKMANIVEGGETPDLPNAALHDIGYSIAAYPLSL MAAAMQAMVTSLRAMRADQRPGLMDFGELRSRIGFDDYYAASQAYASSKRD >Mature_290_residues TAAKTLRTLLAQDKCHVMPCCFDALSAKLIAQEGYDLTFMSGFAASASRIGAPDLGLMSYGEVVDQARNIATAIDIPLIG DGDTGYGNAMNVRRTVTGFAQAGCASVMIEDQLAPKRCGHTPGKAVVPRQEAYDRIKAAVDARDALREDGGDILILARTD ARHEHGLSEAIERAAVFAELGADILFVEAPKSIAEMQDICSNLPGPKMANIVEGGETPDLPNAALHDIGYSIAAYPLSLM AAAMQAMVTSLRAMRADQRPGLMDFGELRSRIGFDDYYAASQAYASSKRD
Specific function: Catalyzes the formation of proponate and pyruvate from (2R,3S)-2,3-dimethylmalate. Has no activity toward dimethylmaleate, malate, citramalate, isocitrate and citrate [H]
COG id: COG2513
COG function: function code G; PEP phosphonomutase and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the isocitrate lyase/PEP mutase superfamily [H]
Homologues:
Organism=Escherichia coli, GI1786525, Length=236, Percent_Identity=38.9830508474576, Blast_Score=155, Evalue=3e-39, Organism=Escherichia coli, GI1790445, Length=168, Percent_Identity=30.952380952381, Blast_Score=66, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000918 - InterPro: IPR018523 - InterPro: IPR015813 [H]
Pfam domain/function: PF00463 ICL [H]
EC number: =4.1.3.32 [H]
Molecular weight: Translated: 31023; Mature: 30891
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAAKTLRTLLAQDKCHVMPCCFDALSAKLIAQEGYDLTFMSGFAASASRIGAPDLGLMS CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHCHHHHHHHCCCCCCCHHH YGEVVDQARNIATAIDIPLIGDGDTGYGNAMNVRRTVTGFAQAGCASVMIEDQLAPKRCG HHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHCCCCHHHCC HTPGKAVVPRQEAYDRIKAAVDARDALREDGGDILILARTDARHEHGLSEAIERAAVFAE CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCHHHHHHHHHHHHH LGADILFVEAPKSIAEMQDICSNLPGPKMANIVEGGETPDLPNAALHDIGYSIAAYPLSL HCCCEEEEECCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCHHHHHHCHHHHHHHHHH MAAAMQAMVTSLRAMRADQRPGLMDFGELRSRIGFDDYYAASQAYASSKRD HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure TAAKTLRTLLAQDKCHVMPCCFDALSAKLIAQEGYDLTFMSGFAASASRIGAPDLGLMS CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHCHHHHHHHCCCCCCCHHH YGEVVDQARNIATAIDIPLIGDGDTGYGNAMNVRRTVTGFAQAGCASVMIEDQLAPKRCG HHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHCCCCHHHCC HTPGKAVVPRQEAYDRIKAAVDARDALREDGGDILILARTDARHEHGLSEAIERAAVFAE CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCHHHHHHHHHHHHH LGADILFVEAPKSIAEMQDICSNLPGPKMANIVEGGETPDLPNAALHDIGYSIAAYPLSL HCCCEEEEECCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCHHHHHHCHHHHHHHHHH MAAAMQAMVTSLRAMRADQRPGLMDFGELRSRIGFDDYYAASQAYASSKRD HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA