| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is mpp [C]
Identifier: 110679417
GI number: 110679417
Start: 2040350
End: 2041612
Strand: Direct
Name: mpp [C]
Synonym: RD1_2142
Alternate gene names: 110679417
Gene position: 2040350-2041612 (Clockwise)
Preceding gene: 110679416
Following gene: 110679418
Centisome position: 49.37
GC content: 60.49
Gene sequence:
>1263_bases GTGACATTGAACCAACACCGCCTGCCGAATGGCTTTCGCATTGTAACGGAACATATGCCGGGGCTTGCCTCTGCCTCGAT CGGCGTCTGGGTCACGGCGGGGGCACGTCATGAAACGCCGCAACAAAACGGCATCGCCCATTTTCTGGAACATATGGCGT TCAAGGGTACGACGCAGCGCACAGCCTTGCAGATCGCGGAAAGCATCGAGGATGTGGGCGGCTACATCAACGCCTATACC AGCCGGGAGGTGACGGCCTATTACGCGCGGGTGTTGCAAAACGATGTCCCGCTGGCACTGGATGTGATTGCGGATATTCT GCTCAATCCCACGCTGGAAGAGGCCGAGATCGAAGTCGAGCGTGGTGTTATCCTGCAGGAAATCGGCCAGTCGCTGGACA CGCCGGACGATGTGATTTTCGACTGGCTTCAGGAAGAAGCCTATCCAAACCACCCCATGGGGCGCACCATTCTGGGACCG AGCGAGCGGGTATCGCAGTTTTCAAGGAATGATCTGCAGCAGTTCATCGCTCAGCACTACGGACCCGAACAGATGATCCT GTCGGCGGCTGGCGCTGTGGATCACGATGAGATCGTGCGCCTCGCGGAGCAGCTTTTCGGCAGCATGCAGGCCAAACCGA TGTTTGATGTGGATGCCGCGCAGTTTCTGGGCGGTGAGCGTCGCCAGAGCAAAGCGCTCGAGCAGGCGCATTTTGCGCTG GCCTTTGAAAGCCCCGGCTACCGGGATGATTGCATCTATACGGCGCAGATTTACGCCTCTGCACTGGGGGGCGGCATGTC GAGCCGCCTGTTTCAGGAAATCCGCGAAAACCGTGGCCTGTGCTATTCGATCTTTGCACAAGCCGGGGCCTATGCCGACA CCGGTATGACGACGATCTATGCCGGAACCAGTGCCGAGCAGTTGGGTCAACTGGCGGAGATCACAATCGACGAGATAAAA CGCGCCGTGGATGACATGTCTCCCGCCGAAGTGGCCCGTGCGCGCGCGCAGATGAAAGCGGGTCTGCTGATGGGGCTGGA AAGCCCCTCCAACCGCGCAGAACGGCTGGCGCGTCTGGTGCAGATCTGGGACCGGGTGCCGCCACTGGATGAAACAGTGG CGATGATCGACGCGGTGACCACCGGGGACGTGCGTGAATTTGCCCAAAGAATTGCGCAAAGTGCACCGGCGGCCCTCGCG CTTTACGGGCCGGTTGACGGCGCGCCGACGCTGGCGGCTCTGCAGGAGCGCCGTGCAGCGTGA
Upstream 100 bases:
>100_bases CTGCGCGCATGGCGGACCTGTATGACCGCACCGAAAGGGTGACTCGCGTGCCAAACGATCTGGCCGCCCTCAAAGACCAC ATAAAAGGGCACATCTGAGC
Downstream 100 bases:
>100_bases TACTTCGCGGTCGTCGCAAACTCAGGATCGAGACGGAGCGGATGACATTGCGCCCGCCGGTCCATTCGGATTTCCGCGCG TGGTCGCACCTGCGTGCGCA
Product: M16 family peptidase putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 420; Mature: 419
Protein sequence:
>420_residues MTLNQHRLPNGFRIVTEHMPGLASASIGVWVTAGARHETPQQNGIAHFLEHMAFKGTTQRTALQIAESIEDVGGYINAYT SREVTAYYARVLQNDVPLALDVIADILLNPTLEEAEIEVERGVILQEIGQSLDTPDDVIFDWLQEEAYPNHPMGRTILGP SERVSQFSRNDLQQFIAQHYGPEQMILSAAGAVDHDEIVRLAEQLFGSMQAKPMFDVDAAQFLGGERRQSKALEQAHFAL AFESPGYRDDCIYTAQIYASALGGGMSSRLFQEIRENRGLCYSIFAQAGAYADTGMTTIYAGTSAEQLGQLAEITIDEIK RAVDDMSPAEVARARAQMKAGLLMGLESPSNRAERLARLVQIWDRVPPLDETVAMIDAVTTGDVREFAQRIAQSAPAALA LYGPVDGAPTLAALQERRAA
Sequences:
>Translated_420_residues MTLNQHRLPNGFRIVTEHMPGLASASIGVWVTAGARHETPQQNGIAHFLEHMAFKGTTQRTALQIAESIEDVGGYINAYT SREVTAYYARVLQNDVPLALDVIADILLNPTLEEAEIEVERGVILQEIGQSLDTPDDVIFDWLQEEAYPNHPMGRTILGP SERVSQFSRNDLQQFIAQHYGPEQMILSAAGAVDHDEIVRLAEQLFGSMQAKPMFDVDAAQFLGGERRQSKALEQAHFAL AFESPGYRDDCIYTAQIYASALGGGMSSRLFQEIRENRGLCYSIFAQAGAYADTGMTTIYAGTSAEQLGQLAEITIDEIK RAVDDMSPAEVARARAQMKAGLLMGLESPSNRAERLARLVQIWDRVPPLDETVAMIDAVTTGDVREFAQRIAQSAPAALA LYGPVDGAPTLAALQERRAA >Mature_419_residues TLNQHRLPNGFRIVTEHMPGLASASIGVWVTAGARHETPQQNGIAHFLEHMAFKGTTQRTALQIAESIEDVGGYINAYTS REVTAYYARVLQNDVPLALDVIADILLNPTLEEAEIEVERGVILQEIGQSLDTPDDVIFDWLQEEAYPNHPMGRTILGPS ERVSQFSRNDLQQFIAQHYGPEQMILSAAGAVDHDEIVRLAEQLFGSMQAKPMFDVDAAQFLGGERRQSKALEQAHFALA FESPGYRDDCIYTAQIYASALGGGMSSRLFQEIRENRGLCYSIFAQAGAYADTGMTTIYAGTSAEQLGQLAEITIDEIKR AVDDMSPAEVARARAQMKAGLLMGLESPSNRAERLARLVQIWDRVPPLDETVAMIDAVTTGDVREFAQRIAQSAPAALAL YGPVDGAPTLAALQERRAA
Specific function: Unknown
COG id: COG0612
COG function: function code R; Predicted Zn-dependent peptidases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M16 family [H]
Homologues:
Organism=Homo sapiens, GI94538354, Length=415, Percent_Identity=37.1084337349398, Blast_Score=277, Evalue=1e-74, Organism=Homo sapiens, GI46593007, Length=416, Percent_Identity=31.9711538461538, Blast_Score=222, Evalue=6e-58, Organism=Homo sapiens, GI24308013, Length=440, Percent_Identity=26.8181818181818, Blast_Score=142, Evalue=4e-34, Organism=Homo sapiens, GI50592988, Length=421, Percent_Identity=23.5154394299287, Blast_Score=108, Evalue=7e-24, Organism=Escherichia coli, GI1787770, Length=220, Percent_Identity=24.0909090909091, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI2367164, Length=211, Percent_Identity=26.5402843601896, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71999683, Length=414, Percent_Identity=31.8840579710145, Blast_Score=225, Evalue=4e-59, Organism=Caenorhabditis elegans, GI17553678, Length=421, Percent_Identity=30.4038004750594, Blast_Score=176, Evalue=2e-44, Organism=Caenorhabditis elegans, GI17510601, Length=448, Percent_Identity=23.4375, Blast_Score=132, Evalue=4e-31, Organism=Caenorhabditis elegans, GI17569737, Length=425, Percent_Identity=23.0588235294118, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17555260, Length=252, Percent_Identity=21.4285714285714, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6323192, Length=433, Percent_Identity=34.6420323325635, Blast_Score=255, Evalue=9e-69, Organism=Saccharomyces cerevisiae, GI6321813, Length=406, Percent_Identity=26.6009852216749, Blast_Score=137, Evalue=3e-33, Organism=Saccharomyces cerevisiae, GI6319426, Length=422, Percent_Identity=26.0663507109005, Blast_Score=106, Evalue=5e-24, Organism=Drosophila melanogaster, GI21357875, Length=414, Percent_Identity=35.7487922705314, Blast_Score=261, Evalue=9e-70, Organism=Drosophila melanogaster, GI24646943, Length=414, Percent_Identity=35.7487922705314, Blast_Score=261, Evalue=9e-70, Organism=Drosophila melanogaster, GI19921772, Length=442, Percent_Identity=24.8868778280543, Blast_Score=151, Evalue=9e-37, Organism=Drosophila melanogaster, GI24665395, Length=380, Percent_Identity=22.6315789473684, Blast_Score=82, Evalue=9e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011249 - InterPro: IPR011237 - InterPro: IPR011765 - InterPro: IPR001431 - InterPro: IPR007863 [H]
Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]
EC number: 3.4.99.- [C]
Molecular weight: Translated: 45981; Mature: 45850
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: PS00143 INSULINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLNQHRLPNGFRIVTEHMPGLASASIGVWVTAGARHETPQQNGIAHFLEHMAFKGTTQR CCCCCCCCCCCCEEHHHHCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCHHH TALQIAESIEDVGGYINAYTSREVTAYYARVLQNDVPLALDVIADILLNPTLEEAEIEVE HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHH RGVILQEIGQSLDTPDDVIFDWLQEEAYPNHPMGRTILGPSERVSQFSRNDLQQFIAQHY HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC GPEQMILSAAGAVDHDEIVRLAEQLFGSMQAKPMFDVDAAQFLGGERRQSKALEQAHFAL CHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHEE AFESPGYRDDCIYTAQIYASALGGGMSSRLFQEIRENRGLCYSIFAQAGAYADTGMTTIY EECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEHHHHHHCCCCCCCCEEEE AGTSAEQLGQLAEITIDEIKRAVDDMSPAEVARARAQMKAGLLMGLESPSNRAERLARLV ECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH QIWDRVPPLDETVAMIDAVTTGDVREFAQRIAQSAPAALALYGPVDGAPTLAALQERRAA HHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCC >Mature Secondary Structure TLNQHRLPNGFRIVTEHMPGLASASIGVWVTAGARHETPQQNGIAHFLEHMAFKGTTQR CCCCCCCCCCCEEHHHHCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCHHH TALQIAESIEDVGGYINAYTSREVTAYYARVLQNDVPLALDVIADILLNPTLEEAEIEVE HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHH RGVILQEIGQSLDTPDDVIFDWLQEEAYPNHPMGRTILGPSERVSQFSRNDLQQFIAQHY HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC GPEQMILSAAGAVDHDEIVRLAEQLFGSMQAKPMFDVDAAQFLGGERRQSKALEQAHFAL CHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHEE AFESPGYRDDCIYTAQIYASALGGGMSSRLFQEIRENRGLCYSIFAQAGAYADTGMTTIY EECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEHHHHHHCCCCCCCCEEEE AGTSAEQLGQLAEITIDEIKRAVDDMSPAEVARARAQMKAGLLMGLESPSNRAERLARLV ECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH QIWDRVPPLDETVAMIDAVTTGDVREFAQRIAQSAPAALALYGPVDGAPTLAALQERRAA HHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Zn [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA