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The map label for this gene is ybgC [H]

Identifier: 110679372

GI number: 110679372

Start: 1997731

End: 1998129

Strand: Direct

Name: ybgC [H]

Synonym: RD1_2092

Alternate gene names: 110679372

Gene position: 1997731-1998129 (Clockwise)

Preceding gene: 110679371

Following gene: 110679373

Centisome position: 48.33

GC content: 58.65

Gene sequence:

>399_bases
ATGAGCCACAGCTTTCCCATCCGCGTCTATTACGAAGACACGGATATGGCCGGGATCGTCTATTACGCCAATTACCTGCG
CTATATTGAGCGCGCGCGCAGCGACTGGGTGCGCGAGATCGGCATCGATCAGCTTGCGATGAAAGCCGCAGGCGTTGTCT
TCGCCGTCAGGCGGGTCGAGGCGGATTACATCGCCCCGGCAACCTTTGATGACCGGCTGGTGGTGCGCACCGAAATGACG
CAGCTGACACCCGCACGCATGGTGATGTCGCAGGACATTTGGCGCGATGAGACGCTGATGTTTGCAGCAAAGGTGACGAT
TGTGTGCATCGGGCCGGGGAGTAAGCCTGCGAGGTTGCCAGCAAATCTCCGCTCACTGCCCTTATCTGACGAGCGATAA

Upstream 100 bases:

>100_bases
TCGCCGGGCTTATCCGCGCGGCCTATGATCCTGTTCTGCCGGTGGCATCGTCGGATGCCAGCCATGCACTTCGGCTTGCG
GCGCGCGTGGGGCTGTCACA

Downstream 100 bases:

>100_bases
CACCATAGTGATAGCTTTCTGTACAAGGCTGCGCTAGACTTGCCAGCAATGGAGGTCGAAACAATCGACCCCGGGCGTAT
TGGGCAAAGAGCAGGCATAT

Product: thioesterase family protein

Products: NA

Alternate protein names: Acyl-CoA thioesterase [H]

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MSHSFPIRVYYEDTDMAGIVYYANYLRYIERARSDWVREIGIDQLAMKAAGVVFAVRRVEADYIAPATFDDRLVVRTEMT
QLTPARMVMSQDIWRDETLMFAAKVTIVCIGPGSKPARLPANLRSLPLSDER

Sequences:

>Translated_132_residues
MSHSFPIRVYYEDTDMAGIVYYANYLRYIERARSDWVREIGIDQLAMKAAGVVFAVRRVEADYIAPATFDDRLVVRTEMT
QLTPARMVMSQDIWRDETLMFAAKVTIVCIGPGSKPARLPANLRSLPLSDER
>Mature_131_residues
SHSFPIRVYYEDTDMAGIVYYANYLRYIERARSDWVREIGIDQLAMKAAGVVFAVRRVEADYIAPATFDDRLVVRTEMTQ
LTPARMVMSQDIWRDETLMFAAKVTIVCIGPGSKPARLPANLRSLPLSDER

Specific function: Thioesterase that appears to be involved in phospholipid metabolism. Some specific acyl-ACPs could be physiological substrates. Displays acyl-CoA thioesterase activity on malonyl-CoA in vitro, catalyzing the hydrolysis of the thioester bond [H]

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=121, Percent_Identity=42.1487603305785, Blast_Score=99, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683
- InterPro:   IPR014166 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 15094; Mature: 14962

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHSFPIRVYYEDTDMAGIVYYANYLRYIERARSDWVREIGIDQLAMKAAGVVFAVRRVE
CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHC
ADYIAPATFDDRLVVRTEMTQLTPARMVMSQDIWRDETLMFAAKVTIVCIGPGSKPARLP
CCCCCCCCCCCEEEEEECCHHCCHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCCC
ANLRSLPLSDER
CCCCCCCCCCCC
>Mature Secondary Structure 
SHSFPIRVYYEDTDMAGIVYYANYLRYIERARSDWVREIGIDQLAMKAAGVVFAVRRVE
CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHC
ADYIAPATFDDRLVVRTEMTQLTPARMVMSQDIWRDETLMFAAKVTIVCIGPGSKPARLP
CCCCCCCCCCCEEEEEECCHHCCHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCCC
ANLRSLPLSDER
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]