| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110679345
Identifier: 110679345
GI number: 110679345
Start: 1971252
End: 1972271
Strand: Reverse
Name: 110679345
Synonym: RD1_2064
Alternate gene names: NA
Gene position: 1972271-1971252 (Counterclockwise)
Preceding gene: 110679351
Following gene: 110679344
Centisome position: 47.72
GC content: 62.06
Gene sequence:
>1020_bases ATGCACAGCTATGATCACAAAACGCTGGAGGCGTATCTGGCCACACACGTGCCGGGATTCGGGTCGCTGGACGGCATCGA AAAATTCTCGGATGGGCAATCCAACCCGACCTACCGGCTCACCAGTGGGGGCACGGATTTCGTGCTGCGCGCCAAACCCC CCGGTGTCCTGCTGAAATCCGCCCATGCGGTGGATCGCGAATTCCGCGTGATGCAGGCGCTGGCCTGCACAGATGTGCCG GTGCCCCATGTGCTGCATCTGAGCGGTGAAGACACCCCGCTGGGCGCGCAGTTCATGGTGATGGAGATGGTCAAAGGCCG CATCTTCTGGGATCCGGCTCTGACCGGCATGTCCCCGGCAGAGCGAGCCGCGATCTATGACGCCATGAACGAAACGCTCG CTCGGTTGCACAGCGTTGTGCCCGACAGCATCGGGTTGGGCGATTACGGCAAGCCGGGCAATTACTTCGAACGGCAAGTG ACCCGCTGGTCTGGTCAATACCAGCAAGCTGCGCGCGCGCCGCTGCCTGATGCGCTCTGGCTCATGGAATGGCTCAGCAC AAACATGGTGAGCGATGACGGCGCGAGCAGTATCGTGCATGGCGATTACCGCATCGACAATATGATCTTTGCGCCCGACG CGCCGCGCGTTCTGGCCGTTTTGGATTGGGAGTTGTCCACCCTCGGCCACCCGCTGGCCGACCTTGCCTATCAGTGCATG CATTGGCGGCTGCCCCATGCCGGTCATTTTCGCGGCCTGGGGAGGGTGGATCGTGCCGCCCTTGGGTTGCCGGATGAGGC CGCCTATGTGGCCGCCTATTGCGCGCGGCGACAGATTTCGGTGCCGGACAACTGGACATTCTATCTGGTGTTTTCCTATT TCCGCCTGCTTGCGATCCTGCAAGGGGTGCGGCGCCGCGGGCTGGAGGGCAACGCCTCAAACCCCAAGGATACAGAGCGG TTGCGCGATGTGATTGCGCTTTTGGCCCACGATGCGCGCCAGCTTGCACAAACGGCATGA
Upstream 100 bases:
>100_bases ATCACCGTCTCCTTCAGCCCGCCCAACGGGGCTTTCCCCCGCGGCACAGGTTTGCTTAGATCACCTGCGGTGTCCATAAG ACAAATCAAGGGGGATGCGC
Downstream 100 bases:
>100_bases CCTGCTTTGACCGGCTGAAGGCTTGACGCCGTGGGCAGACCTGTGATCCTGCTTTGGCGGCACCGCGATTTTCGAGGATT ACGATGAACCCCAAACACGC
Product: phosphotransferase, putative
Products: NA
Alternate protein names: Phosphotransferase; Phosphotransferase Family Protein; Phosphotransferase Family Protein; Phosphotransferase Family; Acyl-CoA Dehydrogenase; Acyl-Co A Dehydrogenase; Tyrosine Protein Kinase/Aminoglycoside Phosphotransferase; Acyl-CoA Dehydrogenase FadE; Acyl-CoA Dehydrogenase Domain-Containing Protein; Acyl-CoA Dehydrogenase Family Member
Number of amino acids: Translated: 339; Mature: 339
Protein sequence:
>339_residues MHSYDHKTLEAYLATHVPGFGSLDGIEKFSDGQSNPTYRLTSGGTDFVLRAKPPGVLLKSAHAVDREFRVMQALACTDVP VPHVLHLSGEDTPLGAQFMVMEMVKGRIFWDPALTGMSPAERAAIYDAMNETLARLHSVVPDSIGLGDYGKPGNYFERQV TRWSGQYQQAARAPLPDALWLMEWLSTNMVSDDGASSIVHGDYRIDNMIFAPDAPRVLAVLDWELSTLGHPLADLAYQCM HWRLPHAGHFRGLGRVDRAALGLPDEAAYVAAYCARRQISVPDNWTFYLVFSYFRLLAILQGVRRRGLEGNASNPKDTER LRDVIALLAHDARQLAQTA
Sequences:
>Translated_339_residues MHSYDHKTLEAYLATHVPGFGSLDGIEKFSDGQSNPTYRLTSGGTDFVLRAKPPGVLLKSAHAVDREFRVMQALACTDVP VPHVLHLSGEDTPLGAQFMVMEMVKGRIFWDPALTGMSPAERAAIYDAMNETLARLHSVVPDSIGLGDYGKPGNYFERQV TRWSGQYQQAARAPLPDALWLMEWLSTNMVSDDGASSIVHGDYRIDNMIFAPDAPRVLAVLDWELSTLGHPLADLAYQCM HWRLPHAGHFRGLGRVDRAALGLPDEAAYVAAYCARRQISVPDNWTFYLVFSYFRLLAILQGVRRRGLEGNASNPKDTER LRDVIALLAHDARQLAQTA >Mature_339_residues MHSYDHKTLEAYLATHVPGFGSLDGIEKFSDGQSNPTYRLTSGGTDFVLRAKPPGVLLKSAHAVDREFRVMQALACTDVP VPHVLHLSGEDTPLGAQFMVMEMVKGRIFWDPALTGMSPAERAAIYDAMNETLARLHSVVPDSIGLGDYGKPGNYFERQV TRWSGQYQQAARAPLPDALWLMEWLSTNMVSDDGASSIVHGDYRIDNMIFAPDAPRVLAVLDWELSTLGHPLADLAYQCM HWRLPHAGHFRGLGRVDRAALGLPDEAAYVAAYCARRQISVPDNWTFYLVFSYFRLLAILQGVRRRGLEGNASNPKDTER LRDVIALLAHDARQLAQTA
Specific function: Unknown
COG id: COG3173
COG function: function code R; Predicted aminoglycoside phosphotransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI48976061, Length=307, Percent_Identity=46.9055374592834, Blast_Score=286, Evalue=3e-77, Organism=Homo sapiens, GI211971008, Length=307, Percent_Identity=46.9055374592834, Blast_Score=285, Evalue=3e-77, Organism=Homo sapiens, GI38505218, Length=341, Percent_Identity=42.8152492668622, Blast_Score=276, Evalue=1e-74, Organism=Caenorhabditis elegans, GI17562446, Length=322, Percent_Identity=38.8198757763975, Blast_Score=214, Evalue=6e-56,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37633; Mature: 37633
Theoretical pI: Translated: 6.57; Mature: 6.57
Prosite motif: PS00109 PROTEIN_KINASE_TYR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSYDHKTLEAYLATHVPGFGSLDGIEKFSDGQSNPTYRLTSGGTDFVLRAKPPGVLLKS CCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEEEECCCCEEEEEECCCCHHHHH AHAVDREFRVMQALACTDVPVPHVLHLSGEDTPLGAQFMVMEMVKGRIFWDPALTGMSPA HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEECCCCCCCCHH ERAAIYDAMNETLARLHSVVPDSIGLGDYGKPGNYFERQVTRWSGQYQQAARAPLPDALW HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCCHHHH LMEWLSTNMVSDDGASSIVHGDYRIDNMIFAPDAPRVLAVLDWELSTLGHPLADLAYQCM HHHHHHHCCCCCCCCCCEEECCEEECCEEECCCCCCEEEEECCHHHHHCCCHHHHHHHHH HWRLPHAGHFRGLGRVDRAALGLPDEAAYVAAYCARRQISVPDNWTFYLVFSYFRLLAIL HHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH QGVRRRGLEGNASNPKDTERLRDVIALLAHDARQLAQTA HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MHSYDHKTLEAYLATHVPGFGSLDGIEKFSDGQSNPTYRLTSGGTDFVLRAKPPGVLLKS CCCCCHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEEEECCCCEEEEEECCCCHHHHH AHAVDREFRVMQALACTDVPVPHVLHLSGEDTPLGAQFMVMEMVKGRIFWDPALTGMSPA HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEECCCCCCCCHH ERAAIYDAMNETLARLHSVVPDSIGLGDYGKPGNYFERQVTRWSGQYQQAARAPLPDALW HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCCHHHH LMEWLSTNMVSDDGASSIVHGDYRIDNMIFAPDAPRVLAVLDWELSTLGHPLADLAYQCM HHHHHHHCCCCCCCCCCEEECCEEECCEEECCCCCCEEEEECCHHHHHCCCHHHHHHHHH HWRLPHAGHFRGLGRVDRAALGLPDEAAYVAAYCARRQISVPDNWTFYLVFSYFRLLAIL HHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH QGVRRRGLEGNASNPKDTERLRDVIALLAHDARQLAQTA HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA