| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110679342
Identifier: 110679342
GI number: 110679342
Start: 1968226
End: 1969008
Strand: Reverse
Name: 110679342
Synonym: RD1_2061
Alternate gene names: NA
Gene position: 1969008-1968226 (Counterclockwise)
Preceding gene: 110679343
Following gene: 110679340
Centisome position: 47.64
GC content: 57.98
Gene sequence:
>783_bases ATGCCGTTGGAAATAATTCCGGGAAATGGCCCTTTGATCGTTGCGATGCCCTATACCGGCACGAATATCCGGCGCGAACT GGTGGAGCGCCTGCATGATCAAAGCCGCTATTTTACCTCCAATGACCGATATCTTGACCGGCTGCTCAGCGGTCTGGCAC AGGATGCAACGACCATTCGCACCAACTTTCATCGCTATGTCTCGGATGTGGATGCGGTCTCAAAAGGCTCGGAATTGCGT GCGCGCGATGGCATGCTCGGCGTGATCCCCCTGATTGATCGCGATGGCACCGGTATCTGGGACACGCCGCCCAGCGTGAG TGACGCAAGGGTTTGGCGGGCGTTGTATTTCGCGCCCTATCATGCAGCGCTGGCCACACAGATTGCCCGCGTACGCGCCA AATATGGCCATGCGATTGTGCTGAACTGTCGGGCAAGGCGCGACACGAACGCCGCTGGCTCAGATGTACCGGACATCGAA TTCTCCACGCATTTGGGGGCATCCTGCGCTGTCAGCCTGTCGATGAAACTGGCCACGCTGGTTAAAAGTAGCAGCGCCCA TAGTGTGACGTTCAACGGTCAGTTGCGAACCGGGTTGACCACGCGCCAATATGGCAGGCCAAAGGCAAACACGCATGCCT TTGATATGGACGTGCACGAAAGATGCTACCTGACGGAAGAGCGTGAGGGCGAAGGCGGGCATTACGACGCTGAAAAAGCC GGACCCCTGCGGGAAACGCTGCGCGAGGTGATGGACCATCTGAGCCGTTGGACGCCGTACTGA
Upstream 100 bases:
>100_bases TGTGCAGTGACAGATTGACCGAACGGCGCGTGAACTCCGCGCTGTCAAATTACCAGTATGATCTTGCCGCTGCATTCACT GATATTGGGGGGGTATCCGC
Downstream 100 bases:
>100_bases CAGTGCCACGTCGCTTTTGGCAATAGCGCCTGCCGCCTGTACAGGCCCGGCGTCTACTGCGCCTGACGAATTAACCGAAA CATCAAGAACCACGTAACGC
Product: n-formylglutamate amidohydrolase, putative
Products: L-glutamate; formamide
Alternate protein names: N-Formylglutamate Deformylase; Formylglutamate Amidohydrolase; Formiminoglutamase; Formiminoglutamase Protein; N-Formylglutamate Amidohydrolase HutG; Histidine Degradation; HutG Protein; N-Formylglutamate Deformylase Family Protein; N-Formylglutamate Amidohydrolase Superfamily; Formylglutamte Amindohyrolase; Hydrolase; N-Formylglutamate_deformylase Protein; N-Formylglutamate Amidohydrolase Family Protein
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MPLEIIPGNGPLIVAMPYTGTNIRRELVERLHDQSRYFTSNDRYLDRLLSGLAQDATTIRTNFHRYVSDVDAVSKGSELR ARDGMLGVIPLIDRDGTGIWDTPPSVSDARVWRALYFAPYHAALATQIARVRAKYGHAIVLNCRARRDTNAAGSDVPDIE FSTHLGASCAVSLSMKLATLVKSSSAHSVTFNGQLRTGLTTRQYGRPKANTHAFDMDVHERCYLTEEREGEGGHYDAEKA GPLRETLREVMDHLSRWTPY
Sequences:
>Translated_260_residues MPLEIIPGNGPLIVAMPYTGTNIRRELVERLHDQSRYFTSNDRYLDRLLSGLAQDATTIRTNFHRYVSDVDAVSKGSELR ARDGMLGVIPLIDRDGTGIWDTPPSVSDARVWRALYFAPYHAALATQIARVRAKYGHAIVLNCRARRDTNAAGSDVPDIE FSTHLGASCAVSLSMKLATLVKSSSAHSVTFNGQLRTGLTTRQYGRPKANTHAFDMDVHERCYLTEEREGEGGHYDAEKA GPLRETLREVMDHLSRWTPY >Mature_259_residues PLEIIPGNGPLIVAMPYTGTNIRRELVERLHDQSRYFTSNDRYLDRLLSGLAQDATTIRTNFHRYVSDVDAVSKGSELRA RDGMLGVIPLIDRDGTGIWDTPPSVSDARVWRALYFAPYHAALATQIARVRAKYGHAIVLNCRARRDTNAAGSDVPDIEF STHLGASCAVSLSMKLATLVKSSSAHSVTFNGQLRTGLTTRQYGRPKANTHAFDMDVHERCYLTEEREGEGGHYDAEKAG PLRETLREVMDHLSRWTPY
Specific function: Unknown
COG id: COG3741
COG function: function code E; N-formylglutamate amidohydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.5.3.8
Molecular weight: Translated: 29019; Mature: 28888
Theoretical pI: Translated: 8.11; Mature: 8.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLEIIPGNGPLIVAMPYTGTNIRRELVERLHDQSRYFTSNDRYLDRLLSGLAQDATTIR CCCEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHCEECCCHHHHHHHHHHHHHHHHHHH TNFHRYVSDVDAVSKGSELRARDGMLGVIPLIDRDGTGIWDTPPSVSDARVWRALYFAPY HHHHHHHHHHHHHCCCCCHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH HAALATQIARVRAKYGHAIVLNCRARRDTNAAGSDVPDIEFSTHLGASCAVSLSMKLATL HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCEEHHCCCCHHHHHHHHHHHHH VKSSSAHSVTFNGQLRTGLTTRQYGRPKANTHAFDMDVHERCYLTEEREGEGGHYDAEKA HHCCCCCEEEECCEEECCCCHHHCCCCCCCCEEEECCHHHHEEECCCCCCCCCCCCCCCC GPLRETLREVMDHLSRWTPY CCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure PLEIIPGNGPLIVAMPYTGTNIRRELVERLHDQSRYFTSNDRYLDRLLSGLAQDATTIR CCEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHCEECCCHHHHHHHHHHHHHHHHHHH TNFHRYVSDVDAVSKGSELRARDGMLGVIPLIDRDGTGIWDTPPSVSDARVWRALYFAPY HHHHHHHHHHHHHCCCCCHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH HAALATQIARVRAKYGHAIVLNCRARRDTNAAGSDVPDIEFSTHLGASCAVSLSMKLATL HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCEEHHCCCCHHHHHHHHHHHHH VKSSSAHSVTFNGQLRTGLTTRQYGRPKANTHAFDMDVHERCYLTEEREGEGGHYDAEKA HHCCCCCEEEECCEEECCCCHHHCCCCCCCCEEEECCHHHHEEECCCCCCCCCCCCCCCC GPLRETLREVMDHLSRWTPY CCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: N-formimidoyl-L-glutamate; H2O
Specific reaction: N-formimidoyl-L-glutamate + H2O = L-glutamate + formamide
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA