| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is guaD [H]
Identifier: 110679291
GI number: 110679291
Start: 1915518
End: 1916825
Strand: Reverse
Name: guaD [H]
Synonym: RD1_2008
Alternate gene names: 110679291
Gene position: 1916825-1915518 (Counterclockwise)
Preceding gene: 110679297
Following gene: 110679286
Centisome position: 46.38
GC content: 61.77
Gene sequence:
>1308_bases ATGAGCGAATATGATCTGATCCTTGGGCAGACGTTCCAAGTCACCGCCAACCCGATGACGACGCCCTGGCAGCAGGCCGT GACGGTCGCCAGCGATGGCGCTGTTTTGCTGCGAGACGGTCGCATCGAACAGGTCGGTCATGCCAGTGATCTGCGCCAGC AACACCCGCAGGCCCGGATCACGGACTATGGGGATAAGCTGGTCTGCCCGGGCTTTGTCGACGCGCATGTCCACTACCCG CAGACCGCCATCATCGCCAGTTGGGGCAAACAGCTGATCGACTGGCTGAACACCTATACCTTTCCCGAAGAAACCCGCCT GTGCGATCCCGCCTACGCACGGGCCATCGCGGATCGCTACCTCGACCTCGCGCTGGCACATGGCACCACGACGGTCTGCT CTTATGCCACGTCCCACCCGGCCAGCGTGGATGCCTTTTTCGACGCGGCAGAACGGCGCGGGCTGCGCGTTATCGCGGGC AAAACCTGCATGGACCGCAATGCGCCGGAGGCGCTTTGTGATACCGTTCAACACGCCCATGACGAAAGCAAATCGCTGCT GGAAAAATGGCATGGCCGGGGTCGTGCGCATTATGCGATCACGCCGCGCTTTTCGCCCACTTCGACGCCGGAACAACTGG AAGCCCTCGGTGCGCTTTGGGCACAGCATCCGAGCTGCCTCATGCAGACGCATCTGAGTGAGCAGGTGCCGGAAATCAAA TGGGTGCGCGAACTTTTCCCGACGGCGCGCGACTATCTCGATACCTATGAGATGCATGGGTTGATCGGGGAGCGCGCGGT TTTTGGCCATGCCATCCACCTTGAACCGCGCGAAATCGACCGCATCGCAGAGACCGGCGCGGCGCTGGTGCATTGTCCGA CCTCGAACACCTTTATCGGGTCCGGGTTGATGGATGTGGCGGGCCTCGCGGCGCGTTCCGTCCCTGTCGGATTGGCAACA GACACGGGCGGCGGGTCGTCGTTTTCGATGTTGCGCACGATGGCCGCCGCTTACGAGGTGGCCCAACTGCGCGGCACCGC GTTGCACCCGGCGCAACTGCTTTATCTTGCGACTGCCGGGTCGGCGCGTGCGTTGCATTTGCATGACACAATCGGCACCC TTTCACCGGGGTATGAAGCCGACCTGACGATCCTTGATCTGGCCTCCACCCCAGCGATTTCCCAACGCGCCGCCGAAGCG GAAACCATCTGGGAAGCGATTTTTCCAACCATCATGATGGGCGATGACCGGGCCATTGCAGATGTCTGGATCGCCGGAAA ACGGCGGATCACAGACCAGAGCGTCTGA
Upstream 100 bases:
>100_bases CTCCTGCTGCAGGGCAGACAATAGGCGCGCGCCAATGTGGTTACAATGGCGCGCGCGGATGATCGTTGCTGTTGCCGGGG CAAGCGCCTAAGAGTTGCCT
Downstream 100 bases:
>100_bases CGAAGTATGTGGTTCCGGCTTTTCGCATGACGCCTTAGCCGCCCGGCCCGTCACATCCCGTCGCGCAGGGCCTCCACCAG ACTGTTCTGGCGGGCAATCA
Product: guanine deaminase
Products: NA
Alternate protein names: Guanase; Guanine aminase; Guanine aminohydrolase; GAH [H]
Number of amino acids: Translated: 435; Mature: 434
Protein sequence:
>435_residues MSEYDLILGQTFQVTANPMTTPWQQAVTVASDGAVLLRDGRIEQVGHASDLRQQHPQARITDYGDKLVCPGFVDAHVHYP QTAIIASWGKQLIDWLNTYTFPEETRLCDPAYARAIADRYLDLALAHGTTTVCSYATSHPASVDAFFDAAERRGLRVIAG KTCMDRNAPEALCDTVQHAHDESKSLLEKWHGRGRAHYAITPRFSPTSTPEQLEALGALWAQHPSCLMQTHLSEQVPEIK WVRELFPTARDYLDTYEMHGLIGERAVFGHAIHLEPREIDRIAETGAALVHCPTSNTFIGSGLMDVAGLAARSVPVGLAT DTGGGSSFSMLRTMAAAYEVAQLRGTALHPAQLLYLATAGSARALHLHDTIGTLSPGYEADLTILDLASTPAISQRAAEA ETIWEAIFPTIMMGDDRAIADVWIAGKRRITDQSV
Sequences:
>Translated_435_residues MSEYDLILGQTFQVTANPMTTPWQQAVTVASDGAVLLRDGRIEQVGHASDLRQQHPQARITDYGDKLVCPGFVDAHVHYP QTAIIASWGKQLIDWLNTYTFPEETRLCDPAYARAIADRYLDLALAHGTTTVCSYATSHPASVDAFFDAAERRGLRVIAG KTCMDRNAPEALCDTVQHAHDESKSLLEKWHGRGRAHYAITPRFSPTSTPEQLEALGALWAQHPSCLMQTHLSEQVPEIK WVRELFPTARDYLDTYEMHGLIGERAVFGHAIHLEPREIDRIAETGAALVHCPTSNTFIGSGLMDVAGLAARSVPVGLAT DTGGGSSFSMLRTMAAAYEVAQLRGTALHPAQLLYLATAGSARALHLHDTIGTLSPGYEADLTILDLASTPAISQRAAEA ETIWEAIFPTIMMGDDRAIADVWIAGKRRITDQSV >Mature_434_residues SEYDLILGQTFQVTANPMTTPWQQAVTVASDGAVLLRDGRIEQVGHASDLRQQHPQARITDYGDKLVCPGFVDAHVHYPQ TAIIASWGKQLIDWLNTYTFPEETRLCDPAYARAIADRYLDLALAHGTTTVCSYATSHPASVDAFFDAAERRGLRVIAGK TCMDRNAPEALCDTVQHAHDESKSLLEKWHGRGRAHYAITPRFSPTSTPEQLEALGALWAQHPSCLMQTHLSEQVPEIKW VRELFPTARDYLDTYEMHGLIGERAVFGHAIHLEPREIDRIAETGAALVHCPTSNTFIGSGLMDVAGLAARSVPVGLATD TGGGSSFSMLRTMAAAYEVAQLRGTALHPAQLLYLATAGSARALHLHDTIGTLSPGYEADLTILDLASTPAISQRAAEAE TIWEAIFPTIMMGDDRAIADVWIAGKRRITDQSV
Specific function: Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia [H]
COG id: COG0402
COG function: function code FR; Cytosine deaminase and related metal-dependent hydrolases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATZ/TRZ family [H]
Homologues:
Organism=Homo sapiens, GI4758426, Length=380, Percent_Identity=30, Blast_Score=188, Evalue=7e-48, Organism=Escherichia coli, GI1789249, Length=403, Percent_Identity=42.6799007444169, Blast_Score=374, Evalue=1e-105, Organism=Saccharomyces cerevisiae, GI6319963, Length=393, Percent_Identity=31.5521628498728, Blast_Score=197, Evalue=2e-51, Organism=Drosophila melanogaster, GI24643849, Length=405, Percent_Identity=33.5802469135802, Blast_Score=214, Evalue=1e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006680 - InterPro: IPR014311 - InterPro: IPR011059 [H]
Pfam domain/function: PF01979 Amidohydro_1 [H]
EC number: =3.5.4.3 [H]
Molecular weight: Translated: 47494; Mature: 47363
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEYDLILGQTFQVTANPMTTPWQQAVTVASDGAVLLRDGRIEQVGHASDLRQQHPQARI CCCCCEEECCEEEEECCCCCCCHHHHEEEECCCEEEEECCCHHHCCCHHHHHHHCCCCCC TDYGDKLVCPGFVDAHVHYPQTAIIASWGKQLIDWLNTYTFPEETRLCDPAYARAIADRY CCCCCCEECCCCEECCEECCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHH LDLALAHGTTTVCSYATSHPASVDAFFDAAERRGLRVIAGKTCMDRNAPEALCDTVQHAH HHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHH DESKSLLEKWHGRGRAHYAITPRFSPTSTPEQLEALGALWAQHPSCLMQTHLSEQVPEIK HHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHH WVRELFPTARDYLDTYEMHGLIGERAVFGHAIHLEPREIDRIAETGAALVHCPTSNTFIG HHHHHHHHHHHHHHHHHHHHHHHCHHHHCEEEECCHHHHHHHHHCCCEEEECCCCCCCCC SGLMDVAGLAARSVPVGLATDTGGGSSFSMLRTMAAAYEVAQLRGTALHPAQLLYLATAG CCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEECC SARALHLHDTIGTLSPGYEADLTILDLASTPAISQRAAEAETIWEAIFPTIMMGDDRAIA CCEEEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHEEECCCCCEE DVWIAGKRRITDQSV HEEECCCCCCCCCCC >Mature Secondary Structure SEYDLILGQTFQVTANPMTTPWQQAVTVASDGAVLLRDGRIEQVGHASDLRQQHPQARI CCCCEEECCEEEEECCCCCCCHHHHEEEECCCEEEEECCCHHHCCCHHHHHHHCCCCCC TDYGDKLVCPGFVDAHVHYPQTAIIASWGKQLIDWLNTYTFPEETRLCDPAYARAIADRY CCCCCCEECCCCEECCEECCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHH LDLALAHGTTTVCSYATSHPASVDAFFDAAERRGLRVIAGKTCMDRNAPEALCDTVQHAH HHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHH DESKSLLEKWHGRGRAHYAITPRFSPTSTPEQLEALGALWAQHPSCLMQTHLSEQVPEIK HHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHH WVRELFPTARDYLDTYEMHGLIGERAVFGHAIHLEPREIDRIAETGAALVHCPTSNTFIG HHHHHHHHHHHHHHHHHHHHHHHCHHHHCEEEECCHHHHHHHHHCCCEEEECCCCCCCCC SGLMDVAGLAARSVPVGLATDTGGGSSFSMLRTMAAAYEVAQLRGTALHPAQLLYLATAG CCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEECC SARALHLHDTIGTLSPGYEADLTILDLASTPAISQRAAEAETIWEAIFPTIMMGDDRAIA CCEEEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHEEECCCCCEE DVWIAGKRRITDQSV HEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 10913105 [H]