Click here to switch to the map view.

The map label for this gene is y4cH [C]

Identifier: 110679166

GI number: 110679166

Start: 1794462

End: 1794668

Strand: Reverse

Name: y4cH [C]

Synonym: RD1_1876

Alternate gene names: 110679166

Gene position: 1794668-1794462 (Counterclockwise)

Preceding gene: 110679168

Following gene: 110679162

Centisome position: 43.42

GC content: 57.97

Gene sequence:

>207_bases
ATGCCAACTGGCACCGTGAAATGGTTTAATACCACCAAGGGTTACGGGTTTATTGCCCCCGAGGGCGGCGGCTCGGATGT
GTTCGTGCACATCTCTGCGGTGGAACGGTCAGGCCTGACGGGCCTGGCGGACGATCAGAAGGTCGACTTCGAATTGACGG
AAGGGCGAGATGGTCGCCAGATGGCGAGCGATCTTAAACTGCTCTGA

Upstream 100 bases:

>100_bases
AGTAAGGCCGGATTTGGGGTATTTCGCAAGGACAGCCGAAACTGGAAGTGCACACGCCCGTAAAACGGCTGTGTAAAGAG
ACAAAGGAGGCACGGAGAAG

Downstream 100 bases:

>100_bases
TCCGCAACTCATAATACGAGGCTTGGGCCACGAAATCTGGCCCGAGCAGTGCGACGGCATATGTCGGCATCGTGCTTGTC
AACCAGAGCAGATGACAACC

Product: cold shock family protein-related protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 67

Protein sequence:

>68_residues
MPTGTVKWFNTTKGYGFIAPEGGGSDVFVHISAVERSGLTGLADDQKVDFELTEGRDGRQMASDLKLL

Sequences:

>Translated_68_residues
MPTGTVKWFNTTKGYGFIAPEGGGSDVFVHISAVERSGLTGLADDQKVDFELTEGRDGRQMASDLKLL
>Mature_67_residues
PTGTVKWFNTTKGYGFIAPEGGGSDVFVHISAVERSGLTGLADDQKVDFELTEGRDGRQMASDLKLL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=51.5625, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI1788126, Length=55, Percent_Identity=52.7272727272727, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=46.7741935483871, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI2367114, Length=65, Percent_Identity=44.6153846153846, Blast_Score=67, Evalue=3e-13,
Organism=Escherichia coli, GI1789979, Length=56, Percent_Identity=51.7857142857143, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1787834, Length=56, Percent_Identity=48.2142857142857, Blast_Score=62, Evalue=5e-12,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=47.5409836065574, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7319; Mature: 7188

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTGTVKWFNTTKGYGFIAPEGGGSDVFVHISAVERSGLTGLADDQKVDFELTEGRDGRQ
CCCCCEEEEECCCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCH
MASDLKLL
HHCCCCCC
>Mature Secondary Structure 
PTGTVKWFNTTKGYGFIAPEGGGSDVFVHISAVERSGLTGLADDQKVDFELTEGRDGRQ
CCCCEEEEECCCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCH
MASDLKLL
HHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]