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The map label for this gene is ybaO [H]

Identifier: 110679124

GI number: 110679124

Start: 1754394

End: 1754849

Strand: Reverse

Name: ybaO [H]

Synonym: RD1_1829

Alternate gene names: 110679124

Gene position: 1754849-1754394 (Counterclockwise)

Preceding gene: 110679126

Following gene: 110679123

Centisome position: 42.46

GC content: 55.04

Gene sequence:

>456_bases
ATGCTGGACAGCATTGATTTGAAACTCTTGGCTGCCTTGCAGCGCGACGCGCAGTTGACGGCGCAGCAACTGGGGGATTT
GTTGCATCTGTCCAACAGTCAGGCGGGCCGACGCCGTCAACGGCTGGAAAGCGAAGGATACATCAAATCCTATGTTGCGC
GCCTGGATCCACGGCGACTGGGTCTTGCGGTGCAAGGGTTCGTGCAGGTGCACCTTGCCAGCCATGGTGCGGAACAGGCC
AATGCATTTGCGCGGCTGATCAACACGACCCCTCAGATCGTTGACGCATGGACAATGACCGGGGACGCCGACTATCTTTT
GCGCGTTTATTGCGCCGATTTGCCCGATTTCAATCATTTGATACAGGATGTTTTACTATTTCACCCTACAATTGCACGCG
TGCACAGCCAAATCGTAATGGATCAGTTGAAGACCGACGGTCCGCTGCCCATGTGA

Upstream 100 bases:

>100_bases
CAGTTTCTTGCCGCAATGATTGCGCGAATTTCAGGGTCGCACTCGCTATTTTTGCAAGAACACCGCATCATAGGGCCAAC
TTATGCGGAGGTTGTGCATC

Downstream 100 bases:

>100_bases
CCGGACGGGAGACGTAAACGCAATGGAAGGCTTCCTTTATCAGGCGTCCATCTATCTGGCCGCCGCCGTGATTGCCGTTC
CAATTGCGGCCCGCCTGGGC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MLDSIDLKLLAALQRDAQLTAQQLGDLLHLSNSQAGRRRQRLESEGYIKSYVARLDPRRLGLAVQGFVQVHLASHGAEQA
NAFARLINTTPQIVDAWTMTGDADYLLRVYCADLPDFNHLIQDVLLFHPTIARVHSQIVMDQLKTDGPLPM

Sequences:

>Translated_151_residues
MLDSIDLKLLAALQRDAQLTAQQLGDLLHLSNSQAGRRRQRLESEGYIKSYVARLDPRRLGLAVQGFVQVHLASHGAEQA
NAFARLINTTPQIVDAWTMTGDADYLLRVYCADLPDFNHLIQDVLLFHPTIARVHSQIVMDQLKTDGPLPM
>Mature_151_residues
MLDSIDLKLLAALQRDAQLTAQQLGDLLHLSNSQAGRRRQRLESEGYIKSYVARLDPRRLGLAVQGFVQVHLASHGAEQA
NAFARLINTTPQIVDAWTMTGDADYLLRVYCADLPDFNHLIQDVLLFHPTIARVHSQIVMDQLKTDGPLPM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=34.4370860927152, Blast_Score=106, Evalue=7e-25,
Organism=Escherichia coli, GI1787116, Length=143, Percent_Identity=28.6713286713287, Blast_Score=74, Evalue=4e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 16899; Mature: 16899

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDSIDLKLLAALQRDAQLTAQQLGDLLHLSNSQAGRRRQRLESEGYIKSYVARLDPRRL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCHHHH
GLAVQGFVQVHLASHGAEQANAFARLINTTPQIVDAWTMTGDADYLLRVYCADLPDFNHL
HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHCCCCHHHH
IQDVLLFHPTIARVHSQIVMDQLKTDGPLPM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLDSIDLKLLAALQRDAQLTAQQLGDLLHLSNSQAGRRRQRLESEGYIKSYVARLDPRRL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCHHHH
GLAVQGFVQVHLASHGAEQANAFARLINTTPQIVDAWTMTGDADYLLRVYCADLPDFNHL
HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHCCCCHHHH
IQDVLLFHPTIARVHSQIVMDQLKTDGPLPM
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]