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The map label for this gene is soxB [H]

Identifier: 110679085

GI number: 110679085

Start: 1716627

End: 1717880

Strand: Direct

Name: soxB [H]

Synonym: RD1_1788

Alternate gene names: 110679085

Gene position: 1716627-1717880 (Clockwise)

Preceding gene: 110679084

Following gene: 110679086

Centisome position: 41.53

GC content: 60.93

Gene sequence:

>1254_bases
ATGCGTTTTTCAAGTCTGCGGGTCCTGCGCGAAGGGCTGACGGGTAACAGGGGGTGGACGCCGCAATGGCGCGACCCGGC
GCCTAAGGCGGAATATGACGCGATCATTATCGGCGGCGGCGGGCATGGGCTGTCCACCGCGTTTTATCTGGCCAAGAACC
ACGGCATGACCAACATCGCGGTGCTGGAAAAGGGCTATATCGGCGGGGGCAATGTCGGGCGCAACACCACGATCGTGCGC
GCGAATTACTACCTTCCCGGCAATCAGGAATTCTACAGCCATTCGCTCAAACTCTGGGAGGGGCTGGAGCAGGACCTGAA
TTACAATGTGATGTTTTCCCAGCGTGGCATCATCAACCTGTTTCATTCCGATGGGCAGCGCGATGCTTTCGTGCGGCGCG
GCAATGCGATGCATGCGCAGGGCGATGACGCGGTCCTGCTGGATCGTGAAGGGGTGCGCGCACAGCTGCCTTATCTGGAT
TTTGAAAACAGCCGCTTTCCGATTTACGGCGGGCTTTTGCACGCCCGTGGGGGCACTGCGCGCCATGATGCGGTTGCCTG
GGGCTATGCGCGCGGTGCTGATCAAAGAGGCGTCGATCTGCTGCAGAACTGCGAAGTTACGGGCATCGACATTGAAAACG
GCGCGGTGCGCGGCGTGCAAACATCGCGCGGTGTGATCCGCGCCAAAAAAGTCGCCATCGTGACGGCCGGGCGGTCCGGT
CAGGTGGCCGCGATGGCCGGCATGCGGCTGCCGATCGAAAGCCATGTGTTGCAGGCCTTTGTGACGGAGGGGCTGAAGCC
CTGCATTGACCATGTGATCAGCTTTGGGATGGGGCATTTCTATATCAGCCAGTCCGACAAGGGCGGGCTGGTTTTTGGCG
GTGATCTTGATTTCTACGCCTCCTATGCGCAGCGCGGCAATCTGCCCATGGCCGAACATGTGATGGAGGCGGGCATGACC
CTAATGCCGATGATCGGCAAGGCAAAGGTGTTGCGGTCGTGGGGGGGGATCATGGATATGACGCCCGACGGCTCGCCCAT
TATCGACACAACGGATACCGCCGGGCTCTTTATCAATTGCGGCTGGTGTTACGGCGGGTTCAAGGCGGTGCCCGCTTCCG
GGTATGCGCTGGCGCATCTGATGGCGACGGGCGCGCCGCATGAGACAGCGGCAGGCTTTCGCCTTGATCGGTTTCGCACA
GGGCGCGGATTGATGGACGAAGAGGGCACCGGTGCCCAGCACAACCTGCACTGA

Upstream 100 bases:

>100_bases
AAGCGACATATCGCGTCGTCTTTTGGCTGTTGTCGCGGGATTTGCATTGCTACCCTAGGCCGGCAGCATGTCCAAAACGG
CTGCCGGTACAGGGGTATTG

Downstream 100 bases:

>100_bases
TGAACGAGGCTGGGCGCATGCATAAGAAGGGTCGAGAAACATGAGGCTGACCTGTCCGCTGTGCGGCCCGCGTGATCGGC
GGGAGTTTTATTACCAGGGA

Product: sarcosine oxidase, beta subunit

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MRFSSLRVLREGLTGNRGWTPQWRDPAPKAEYDAIIIGGGGHGLSTAFYLAKNHGMTNIAVLEKGYIGGGNVGRNTTIVR
ANYYLPGNQEFYSHSLKLWEGLEQDLNYNVMFSQRGIINLFHSDGQRDAFVRRGNAMHAQGDDAVLLDREGVRAQLPYLD
FENSRFPIYGGLLHARGGTARHDAVAWGYARGADQRGVDLLQNCEVTGIDIENGAVRGVQTSRGVIRAKKVAIVTAGRSG
QVAAMAGMRLPIESHVLQAFVTEGLKPCIDHVISFGMGHFYISQSDKGGLVFGGDLDFYASYAQRGNLPMAEHVMEAGMT
LMPMIGKAKVLRSWGGIMDMTPDGSPIIDTTDTAGLFINCGWCYGGFKAVPASGYALAHLMATGAPHETAAGFRLDRFRT
GRGLMDEEGTGAQHNLH

Sequences:

>Translated_417_residues
MRFSSLRVLREGLTGNRGWTPQWRDPAPKAEYDAIIIGGGGHGLSTAFYLAKNHGMTNIAVLEKGYIGGGNVGRNTTIVR
ANYYLPGNQEFYSHSLKLWEGLEQDLNYNVMFSQRGIINLFHSDGQRDAFVRRGNAMHAQGDDAVLLDREGVRAQLPYLD
FENSRFPIYGGLLHARGGTARHDAVAWGYARGADQRGVDLLQNCEVTGIDIENGAVRGVQTSRGVIRAKKVAIVTAGRSG
QVAAMAGMRLPIESHVLQAFVTEGLKPCIDHVISFGMGHFYISQSDKGGLVFGGDLDFYASYAQRGNLPMAEHVMEAGMT
LMPMIGKAKVLRSWGGIMDMTPDGSPIIDTTDTAGLFINCGWCYGGFKAVPASGYALAHLMATGAPHETAAGFRLDRFRT
GRGLMDEEGTGAQHNLH
>Mature_417_residues
MRFSSLRVLREGLTGNRGWTPQWRDPAPKAEYDAIIIGGGGHGLSTAFYLAKNHGMTNIAVLEKGYIGGGNVGRNTTIVR
ANYYLPGNQEFYSHSLKLWEGLEQDLNYNVMFSQRGIINLFHSDGQRDAFVRRGNAMHAQGDDAVLLDREGVRAQLPYLD
FENSRFPIYGGLLHARGGTARHDAVAWGYARGADQRGVDLLQNCEVTGIDIENGAVRGVQTSRGVIRAKKVAIVTAGRSG
QVAAMAGMRLPIESHVLQAFVTEGLKPCIDHVISFGMGHFYISQSDKGGLVFGGDLDFYASYAQRGNLPMAEHVMEAGMT
LMPMIGKAKVLRSWGGIMDMTPDGSPIIDTTDTAGLFINCGWCYGGFKAVPASGYALAHLMATGAPHETAAGFRLDRFRT
GRGLMDEEGTGAQHNLH

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI24797151, Length=353, Percent_Identity=24.6458923512748, Blast_Score=89, Evalue=7e-18,
Organism=Drosophila melanogaster, GI20130091, Length=393, Percent_Identity=24.4274809160305, Blast_Score=71, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 45243; Mature: 45243

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSSLRVLREGLTGNRGWTPQWRDPAPKAEYDAIIIGGGGHGLSTAFYLAKNHGMTNIA
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCCEEEE
VLEKGYIGGGNVGRNTTIVRANYYLPGNQEFYSHSLKLWEGLEQDLNYNVMFSQRGIINL
EEECCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEE
FHSDGQRDAFVRRGNAMHAQGDDAVLLDREGVRAQLPYLDFENSRFPIYGGLLHARGGTA
ECCCCCCCHHHCCCCEEECCCCCEEEEECCCCEEECCEEECCCCCCCEECCEEECCCCCC
RHDAVAWGYARGADQRGVDLLQNCEVTGIDIENGAVRGVQTSRGVIRAKKVAIVTAGRSG
CCCCEEEHHHCCCCCCCHHHHHCCCEEEEECCCCCEECEECCCCEEEEEEEEEEECCCCC
QVAAMAGMRLPIESHVLQAFVTEGLKPCIDHVISFGMGHFYISQSDKGGLVFGGDLDFYA
CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCHHHHH
SYAQRGNLPMAEHVMEAGMTLMPMIGKAKVLRSWGGIMDMTPDGSPIIDTTDTAGLFINC
HHHHCCCCCHHHHHHHCCCEEEHHHHHHHHHHHCCCEEEECCCCCCEEECCCCCEEEEEE
GWCYGGFKAVPASGYALAHLMATGAPHETAAGFRLDRFRTGRGLMDEEGTGAQHNLH
EEECCCCEECCCCCHHHHHHHHCCCCCCCCCCCEEEHEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRFSSLRVLREGLTGNRGWTPQWRDPAPKAEYDAIIIGGGGHGLSTAFYLAKNHGMTNIA
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCCEEEE
VLEKGYIGGGNVGRNTTIVRANYYLPGNQEFYSHSLKLWEGLEQDLNYNVMFSQRGIINL
EEECCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEE
FHSDGQRDAFVRRGNAMHAQGDDAVLLDREGVRAQLPYLDFENSRFPIYGGLLHARGGTA
ECCCCCCCHHHCCCCEEECCCCCEEEEECCCCEEECCEEECCCCCCCEECCEEECCCCCC
RHDAVAWGYARGADQRGVDLLQNCEVTGIDIENGAVRGVQTSRGVIRAKKVAIVTAGRSG
CCCCEEEHHHCCCCCCCHHHHHCCCEEEEECCCCCEECEECCCCEEEEEEEEEEECCCCC
QVAAMAGMRLPIESHVLQAFVTEGLKPCIDHVISFGMGHFYISQSDKGGLVFGGDLDFYA
CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCHHHHH
SYAQRGNLPMAEHVMEAGMTLMPMIGKAKVLRSWGGIMDMTPDGSPIIDTTDTAGLFINC
HHHHCCCCCHHHHHHHCCCEEEHHHHHHHHHHHCCCEEEECCCCCCEEECCCCCEEEEEE
GWCYGGFKAVPASGYALAHLMATGAPHETAAGFRLDRFRTGRGLMDEEGTGAQHNLH
EEECCCCEECCCCCHHHHHHHHCCCCCCCCCCCEEEHEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]