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The map label for this gene is cycH [H]

Identifier: 110679065

GI number: 110679065

Start: 1693999

End: 1695240

Strand: Reverse

Name: cycH [H]

Synonym: RD1_1767

Alternate gene names: 110679065

Gene position: 1695240-1693999 (Counterclockwise)

Preceding gene: 110679067

Following gene: 110679064

Centisome position: 41.02

GC content: 65.78

Gene sequence:

>1242_bases
ATGACGTTCTGGATTATCTCGGCTGGACTGGCAATCATTGTGGCCGTTTTGATGGTACTTGCCCTGCGCGCGCCGAAACG
CGGCATGACCGAACCTGCGGCGGCCTATGATCTGCGAGTCTATCGTGATCAGCTGCGCGAGGTGGAGAAGGACCTGGCGC
GCGGCGTTGTGGATCCTGCCGATGCCGACCGCGTGCGGGCCGAGATCTCACGCCGCATCCTCGCGGCAGATGCCGCCCTG
CAAACCGATGCGCTCGAAGCGGACGCAAACAAGGGTGCACCGGGTCTGGTCGGGGCCATTCTGGCGGTGGTTCTGGTCGG
TGGCAGCCTGTGGCTTTACATGAATATCGGCGCGCCGGGCTATGGCGATCTGGCCCTCAAGGATCGCATCGTTCTGGCCG
AAGAAGCCCGCGCAAACCGTCCCAGCCAGCAAGAGGCCGAAGACAGCCTGCCCGCCTATGTGGCCCCCCCGGACATCAGC
CCCGATTACGTCGCATTGGTGGAACGGCTGCGCGAGGCCGTGGCCGCACGCCCCGACGATATTCAGGGCCTGACCCTTCT
GGCGCAGAACGAGGGTAACCTCGGTAATTTCCGCGCCGCCGCCCGCGCGCAGGCGGAAATCATCAGGGTGCGCGGCGATG
AGGCGACCAGCGAAGACTACGCGAATTACGCCGACATGCTGATCCTCGCCGCCGGTGGCTATGTCTCTCCCGAAGCGGAA
AGCGTGCTGACCCGGGTGCTTGCCCTTGATCCCACCAATGGCGCGGCGCGCTACTACGTCGGCCTGATGCTGGCGCAGAC
CGGACGCCCCGACAATGCCTTTCGCATCTGGGATCAACTGCTGCGCGAAGGCCCGCGCGAGGCCGCCTGGATCGAACCCA
TTCTCGCCCAGATCGAAGACCTCGCGTTTCGCGCTGGCGTGAACTATCAACTCCCCGAAATCGGCCCCGGACTGGACGCT
CCCGGCGGGCCGAGCGCTGCGGACATCGAAGCCGCCGGTGAGATGAGCCCCTCCGAACGCCTCGAGATGATCGAGAGCAT
GGTGCAGGGCCTCTCGGACCGGCTCGGCACCGAAGGCGGCCCGGTACAGGACTGGGCGCAGCTGATCACCGCACTTGGCG
TCCTGGGCCAGACCGGTGCGGCGCGCAGCGTCTATGAAAACGCCATTCAGGCCTTTGCCGACGACACCCGCGCGCTCGAT
CTGCTGCTGCGCGCCGGACAACGGGCGCAAGTGGCCGAATGA

Upstream 100 bases:

>100_bases
ACATCATCTCGCATGCAACTGCCATGCTCTTGATCGTTTGCCCCTTTTGCGCGGCCCATTTGATCGCTACATGAATAGTC
CAACGCTGCAAGAGGGCTTT

Downstream 100 bases:

>100_bases
TCCTTGAAGACACCGCTGACTTTCTCGCGGCACTTCCCTCCATGCGCAGCCTCATGGGCCTTGATCTGGGCACCCAGACC
ATCGGTGTTGCCGTCAGCGA

Product: cytochrome c-type biogenesis protein CycH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MTFWIISAGLAIIVAVLMVLALRAPKRGMTEPAAAYDLRVYRDQLREVEKDLARGVVDPADADRVRAEISRRILAADAAL
QTDALEADANKGAPGLVGAILAVVLVGGSLWLYMNIGAPGYGDLALKDRIVLAEEARANRPSQQEAEDSLPAYVAPPDIS
PDYVALVERLREAVAARPDDIQGLTLLAQNEGNLGNFRAAARAQAEIIRVRGDEATSEDYANYADMLILAAGGYVSPEAE
SVLTRVLALDPTNGAARYYVGLMLAQTGRPDNAFRIWDQLLREGPREAAWIEPILAQIEDLAFRAGVNYQLPEIGPGLDA
PGGPSAADIEAAGEMSPSERLEMIESMVQGLSDRLGTEGGPVQDWAQLITALGVLGQTGAARSVYENAIQAFADDTRALD
LLLRAGQRAQVAE

Sequences:

>Translated_413_residues
MTFWIISAGLAIIVAVLMVLALRAPKRGMTEPAAAYDLRVYRDQLREVEKDLARGVVDPADADRVRAEISRRILAADAAL
QTDALEADANKGAPGLVGAILAVVLVGGSLWLYMNIGAPGYGDLALKDRIVLAEEARANRPSQQEAEDSLPAYVAPPDIS
PDYVALVERLREAVAARPDDIQGLTLLAQNEGNLGNFRAAARAQAEIIRVRGDEATSEDYANYADMLILAAGGYVSPEAE
SVLTRVLALDPTNGAARYYVGLMLAQTGRPDNAFRIWDQLLREGPREAAWIEPILAQIEDLAFRAGVNYQLPEIGPGLDA
PGGPSAADIEAAGEMSPSERLEMIESMVQGLSDRLGTEGGPVQDWAQLITALGVLGQTGAARSVYENAIQAFADDTRALD
LLLRAGQRAQVAE
>Mature_412_residues
TFWIISAGLAIIVAVLMVLALRAPKRGMTEPAAAYDLRVYRDQLREVEKDLARGVVDPADADRVRAEISRRILAADAALQ
TDALEADANKGAPGLVGAILAVVLVGGSLWLYMNIGAPGYGDLALKDRIVLAEEARANRPSQQEAEDSLPAYVAPPDISP
DYVALVERLREAVAARPDDIQGLTLLAQNEGNLGNFRAAARAQAEIIRVRGDEATSEDYANYADMLILAAGGYVSPEAES
VLTRVLALDPTNGAARYYVGLMLAQTGRPDNAFRIWDQLLREGPREAAWIEPILAQIEDLAFRAGVNYQLPEIGPGLDAP
GGPSAADIEAAGEMSPSERLEMIESMVQGLSDRLGTEGGPVQDWAQLITALGVLGQTGAARSVYENAIQAFADDTRALDL
LLRAGQRAQVAE

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44122; Mature: 43991

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFWIISAGLAIIVAVLMVLALRAPKRGMTEPAAAYDLRVYRDQLREVEKDLARGVVDPA
CEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DADRVRAEISRRILAADAALQTDALEADANKGAPGLVGAILAVVLVGGSLWLYMNIGAPG
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC
YGDLALKDRIVLAEEARANRPSQQEAEDSLPAYVAPPDISPDYVALVERLREAVAARPDD
CCCHHHHCCEEEHHHHHCCCCCHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCC
IQGLTLLAQNEGNLGNFRAAARAQAEIIRVRGDEATSEDYANYADMLILAAGGYVSPEAE
CCCEEEEEECCCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHEECCCCCCCHHH
SVLTRVLALDPTNGAARYYVGLMLAQTGRPDNAFRIWDQLLREGPREAAWIEPILAQIED
HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LAFRAGVNYQLPEIGPGLDAPGGPSAADIEAAGEMSPSERLEMIESMVQGLSDRLGTEGG
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
PVQDWAQLITALGVLGQTGAARSVYENAIQAFADDTRALDLLLRAGQRAQVAE
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TFWIISAGLAIIVAVLMVLALRAPKRGMTEPAAAYDLRVYRDQLREVEKDLARGVVDPA
EEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DADRVRAEISRRILAADAALQTDALEADANKGAPGLVGAILAVVLVGGSLWLYMNIGAPG
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCC
YGDLALKDRIVLAEEARANRPSQQEAEDSLPAYVAPPDISPDYVALVERLREAVAARPDD
CCCHHHHCCEEEHHHHHCCCCCHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCC
IQGLTLLAQNEGNLGNFRAAARAQAEIIRVRGDEATSEDYANYADMLILAAGGYVSPEAE
CCCEEEEEECCCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHEECCCCCCCHHH
SVLTRVLALDPTNGAARYYVGLMLAQTGRPDNAFRIWDQLLREGPREAAWIEPILAQIED
HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LAFRAGVNYQLPEIGPGLDAPGGPSAADIEAAGEMSPSERLEMIESMVQGLSDRLGTEGG
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
PVQDWAQLITALGVLGQTGAARSVYENAIQAFADDTRALDLLLRAGQRAQVAE
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]