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The map label for this gene is 110678967

Identifier: 110678967

GI number: 110678967

Start: 1598408

End: 1599004

Strand: Direct

Name: 110678967

Synonym: RD1_1663

Alternate gene names: NA

Gene position: 1598408-1599004 (Clockwise)

Preceding gene: 110678964

Following gene: 110678968

Centisome position: 38.67

GC content: 55.11

Gene sequence:

>597_bases
ATGCAACAGGATTTTGATACGCTCACGCGTCAGATGCGGGCTTGCAGGCTATGCAACGACCTGCCGCTTGGTCCAAATCC
TATTTTTCAACTGGATGAACGCGCAAAGATCCTGATCGTTGGCCAGGCACCCGGTCGCATCACGCATTTGAAAAATCGCC
CGTTTGATGATCCTTCCGGGGATCGTTTGCGGGGCTGGCTCGGGATTGAGAAATCTGCTTTCTACGGGGATCCGCGGATT
GGCATTTTTCCAATGGGACTCTGCTTCCCTGGCTCAGGGCCTTCAGGCGATAAACCACCACCGGACATTTGTGCAATGAC
TTGGCGTGAGAAGACAATGCGCGCTCTGAAACATGTCGAATTGACCCTGGTTTTGGGGGCCTACGCCATCGCGTGGCATT
TGCCGCACCTCAGCCGACAGAGTGTTGTACAAGCGGTCAGGCACGCGTCTGACGGTGAGGATCGAATGTTCGTCCTGCCC
CACCCAAGCCCGCGCAACAACAGATGGCTCAAGCAAAACCCTTGGTTTGAAGCGGATGTGGTGCCAAGAATCCGGCAAAA
CGTAAGGCGCAGTCTGAGGGAAGCAGAGGGCAGATAA

Upstream 100 bases:

>100_bases
GCAGGCCCCAGCATTCGGTTGAATGTGGGGACATCTCATGTATTGCTGACATACGCCAAAATTCAGCCTGCGGCCTTTGA
AACTGCTGAACTGGGAATGG

Downstream 100 bases:

>100_bases
CCAACTGTCGTCCGGTTAGTTTGGCAAGAACAAGATCATATCAATCGGATCGCCGGATTATGGATAGCTTGCAGGTCATC
AACCTGCGTCATTGCGGGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MQQDFDTLTRQMRACRLCNDLPLGPNPIFQLDERAKILIVGQAPGRITHLKNRPFDDPSGDRLRGWLGIEKSAFYGDPRI
GIFPMGLCFPGSGPSGDKPPPDICAMTWREKTMRALKHVELTLVLGAYAIAWHLPHLSRQSVVQAVRHASDGEDRMFVLP
HPSPRNNRWLKQNPWFEADVVPRIRQNVRRSLREAEGR

Sequences:

>Translated_198_residues
MQQDFDTLTRQMRACRLCNDLPLGPNPIFQLDERAKILIVGQAPGRITHLKNRPFDDPSGDRLRGWLGIEKSAFYGDPRI
GIFPMGLCFPGSGPSGDKPPPDICAMTWREKTMRALKHVELTLVLGAYAIAWHLPHLSRQSVVQAVRHASDGEDRMFVLP
HPSPRNNRWLKQNPWFEADVVPRIRQNVRRSLREAEGR
>Mature_198_residues
MQQDFDTLTRQMRACRLCNDLPLGPNPIFQLDERAKILIVGQAPGRITHLKNRPFDDPSGDRLRGWLGIEKSAFYGDPRI
GIFPMGLCFPGSGPSGDKPPPDICAMTWREKTMRALKHVELTLVLGAYAIAWHLPHLSRQSVVQAVRHASDGEDRMFVLP
HPSPRNNRWLKQNPWFEADVVPRIRQNVRRSLREAEGR

Specific function: Unknown

COG id: COG1573

COG function: function code L; Uracil-DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005122 [H]

Pfam domain/function: PF03167 UDG [H]

EC number: NA

Molecular weight: Translated: 22578; Mature: 22578

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQDFDTLTRQMRACRLCNDLPLGPNPIFQLDERAKILIVGQAPGRITHLKNRPFDDPSG
CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEECCCCCEEECCCCCCCCCCC
DRLRGWLGIEKSAFYGDPRIGIFPMGLCFPGSGPSGDKPPPDICAMTWREKTMRALKHVE
CCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LTLVLGAYAIAWHLPHLSRQSVVQAVRHASDGEDRMFVLPHPSPRNNRWLKQNPWFEADV
HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
VPRIRQNVRRSLREAEGR
CHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQQDFDTLTRQMRACRLCNDLPLGPNPIFQLDERAKILIVGQAPGRITHLKNRPFDDPSG
CCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEECCCCCEEECCCCCCCCCCC
DRLRGWLGIEKSAFYGDPRIGIFPMGLCFPGSGPSGDKPPPDICAMTWREKTMRALKHVE
CCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
LTLVLGAYAIAWHLPHLSRQSVVQAVRHASDGEDRMFVLPHPSPRNNRWLKQNPWFEADV
HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
VPRIRQNVRRSLREAEGR
CHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]