| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110678929
Identifier: 110678929
GI number: 110678929
Start: 1563946
End: 1564980
Strand: Direct
Name: 110678929
Synonym: RD1_1623
Alternate gene names: NA
Gene position: 1563946-1564980 (Clockwise)
Preceding gene: 110678928
Following gene: 110678930
Centisome position: 37.84
GC content: 61.74
Gene sequence:
>1035_bases ATGCGCACCAAAACCAATGACGGCCGTTTTTTCGAGGACTACGCGGTCGGGCAGGTGATCAACCACGCGGTGCCCCGCAC GGTGAAAATGGGCGAGCGCGCGCTTTATCATATGCTCTACCCGGCGCGGCATGCGCTTTATTCATCGGACCAGTTTGCGC AAACCTGTGGGCTGCCCTTCAGCCCGCTGGATGACATGATCGCCTTCCATGTGGTATTTGGCAAAACCGTGCCGGATGTG TCGCTGAATGCCATCGCCAATCTGGGCTATGCCGAAGGGCGCTGGCATCTGCCGGTCTGGCCGGGGGACACGTTGCGCTC ACAGTCCGAGGTCATCGGGGTCAAGCAGAATTCCAACGGGAAAAGCGGCGTGGTCTGGGTGCGCACCACCGGGCTGAACC AGCATGACGAAACAGTCATGGATTATGTGCGCTGGGTGATGGTGCGCAAACGGGACCCGGGGGCGGATGCGCCCGAACCG GTGGTGCCGGACCTTGCCAAAGTGGTTGCGCCGGACACGCTGGTGATCCCGCGCGGTCTGGATTTCACGAACTACGATTT CACCCTCGCCGGTGAGCCGCATCGCTGGGGGGACTACGCGGTGGGCGAGACGATTGACCATGTGGACGGCGTCACCATCG AAGAAGCAGAGCACATGATGGCGACCCGGCTGTGGCAGAACACCGCCAAGGTGCATTTCGACACCTCTGCCCGGCCTGAT GGCTCGCGGTTGATCTATGGCGGGCATGTGATCTCGATGGCGCGTGCGCTCAGTTTTAACGGGCTGGCGAATGCGCAGAT GATCGTTGGACTGAATGGCGGTGCCCATGCGAACCCCTGTGTCAGTGGCGATACGGTGCGCGCGTGGTCCGAAGTGCTGG ACAAGGCCGAAACATCCGCCCCGGGCGTTGGTGCGATCCGCTTGCGATTGGTTGCGACCAAGGGCGGCACGCCTTTCGAG TTGCGCGGTGAGGATGGGAAATACCTGCCCGACGTGCTGCTGGACCTCGATTACTGGGCCTTGATGCCCCTGTAA
Upstream 100 bases:
>100_bases AGACGTGGGACCATGATGCGGGTGTCATGCGGTGCGGGCAGGCGGTCACCAAAGAGGCGCCCGGCACCTATACCGCTGAC ACCAAACTCGGAGAGCACTG
Downstream 100 bases:
>100_bases CGGCGTGACTTCGTTGCGCATGCCGCGTAACCTGAGCGCTGTGCTCGGTTGCTGCACGCGGGAGTACACAGATGGGAAGG TCCACCATGCGTAAAGCGTT
Product: MaoC family protein
Products: NA
Alternate protein names: MaoC Domain Protein Dehydratase; MaoC Family Protein; MaoC-Like Dehydratase; MaoC Domain-Containing Protein Dehydratase; MaoC Domain-Containing Protein; MaoC Domain Protein; Acyl Dehydratase; Dehydrogenase; Acyl Dehydratase-Like Protein; MaoC Like Domain Protein; MaoC Protein; Thiol Ester Dehydrase/Isomerase; Transcriptional Regulator; MoaC Family Protein; P40 Protein; Transcription Regulatory Protein; MaoC Dehydratase; MaoC-Like Domain-Containing Protein; Molybdenum Cofactor Biosynthesis Protein
Number of amino acids: Translated: 344; Mature: 344
Protein sequence:
>344_residues MRTKTNDGRFFEDYAVGQVINHAVPRTVKMGERALYHMLYPARHALYSSDQFAQTCGLPFSPLDDMIAFHVVFGKTVPDV SLNAIANLGYAEGRWHLPVWPGDTLRSQSEVIGVKQNSNGKSGVVWVRTTGLNQHDETVMDYVRWVMVRKRDPGADAPEP VVPDLAKVVAPDTLVIPRGLDFTNYDFTLAGEPHRWGDYAVGETIDHVDGVTIEEAEHMMATRLWQNTAKVHFDTSARPD GSRLIYGGHVISMARALSFNGLANAQMIVGLNGGAHANPCVSGDTVRAWSEVLDKAETSAPGVGAIRLRLVATKGGTPFE LRGEDGKYLPDVLLDLDYWALMPL
Sequences:
>Translated_344_residues MRTKTNDGRFFEDYAVGQVINHAVPRTVKMGERALYHMLYPARHALYSSDQFAQTCGLPFSPLDDMIAFHVVFGKTVPDV SLNAIANLGYAEGRWHLPVWPGDTLRSQSEVIGVKQNSNGKSGVVWVRTTGLNQHDETVMDYVRWVMVRKRDPGADAPEP VVPDLAKVVAPDTLVIPRGLDFTNYDFTLAGEPHRWGDYAVGETIDHVDGVTIEEAEHMMATRLWQNTAKVHFDTSARPD GSRLIYGGHVISMARALSFNGLANAQMIVGLNGGAHANPCVSGDTVRAWSEVLDKAETSAPGVGAIRLRLVATKGGTPFE LRGEDGKYLPDVLLDLDYWALMPL >Mature_344_residues MRTKTNDGRFFEDYAVGQVINHAVPRTVKMGERALYHMLYPARHALYSSDQFAQTCGLPFSPLDDMIAFHVVFGKTVPDV SLNAIANLGYAEGRWHLPVWPGDTLRSQSEVIGVKQNSNGKSGVVWVRTTGLNQHDETVMDYVRWVMVRKRDPGADAPEP VVPDLAKVVAPDTLVIPRGLDFTNYDFTLAGEPHRWGDYAVGETIDHVDGVTIEEAEHMMATRLWQNTAKVHFDTSARPD GSRLIYGGHVISMARALSFNGLANAQMIVGLNGGAHANPCVSGDTVRAWSEVLDKAETSAPGVGAIRLRLVATKGGTPFE LRGEDGKYLPDVLLDLDYWALMPL
Specific function: Unknown
COG id: COG2030
COG function: function code I; Acyl dehydratase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37812; Mature: 37812
Theoretical pI: Translated: 6.08; Mature: 6.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTKTNDGRFFEDYAVGQVINHAVPRTVKMGERALYHMLYPARHALYSSDQFAQTCGLPF CCCCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC SPLDDMIAFHVVFGKTVPDVSLNAIANLGYAEGRWHLPVWPGDTLRSQSEVIGVKQNSNG CCHHHHHEEHHHHCCCCCCCHHHHHHCCCCCCCEEEECCCCCHHHCCCCCEEEEEECCCC KSGVVWVRTTGLNQHDETVMDYVRWVMVRKRDPGADAPEPVVPDLAKVVAPDTLVIPRGL CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCC DFTNYDFTLAGEPHRWGDYAVGETIDHVDGVTIEEAEHMMATRLWQNTAKVHFDTSARPD CCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCC GSRLIYGGHVISMARALSFNGLANAQMIVGLNGGAHANPCVSGDTVRAWSEVLDKAETSA CCEEEECCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCC PGVGAIRLRLVATKGGTPFELRGEDGKYLPDVLLDLDYWALMPL CCCCEEEEEEEEECCCCEEEEECCCCCCCHHHHHCCCHHHCCCC >Mature Secondary Structure MRTKTNDGRFFEDYAVGQVINHAVPRTVKMGERALYHMLYPARHALYSSDQFAQTCGLPF CCCCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC SPLDDMIAFHVVFGKTVPDVSLNAIANLGYAEGRWHLPVWPGDTLRSQSEVIGVKQNSNG CCHHHHHEEHHHHCCCCCCCHHHHHHCCCCCCCEEEECCCCCHHHCCCCCEEEEEECCCC KSGVVWVRTTGLNQHDETVMDYVRWVMVRKRDPGADAPEPVVPDLAKVVAPDTLVIPRGL CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCC DFTNYDFTLAGEPHRWGDYAVGETIDHVDGVTIEEAEHMMATRLWQNTAKVHFDTSARPD CCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCC GSRLIYGGHVISMARALSFNGLANAQMIVGLNGGAHANPCVSGDTVRAWSEVLDKAETSA CCEEEECCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCC PGVGAIRLRLVATKGGTPFELRGEDGKYLPDVLLDLDYWALMPL CCCCEEEEEEEEECCCCEEEEECCCCCCCHHHHHCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA