| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110678902
Identifier: 110678902
GI number: 110678902
Start: 1540407
End: 1542998
Strand: Direct
Name: 110678902
Synonym: RD1_1596
Alternate gene names: NA
Gene position: 1540407-1542998 (Clockwise)
Preceding gene: 110678901
Following gene: 110678905
Centisome position: 37.27
GC content: 62.15
Gene sequence:
>2592_bases ATGGCGTCTTTTTCCCGGCATGATGCGGAAAAAACATTGAAATCAGTGCGATGGCCCCTGCGTTTGACGTGGATGGGGCT GCTGACCGAAGCTGTCGTGCACAGTTTCTGGCCGTTGCTCAGTGTATGTCTTTTGGTCATGTCGGCGCTGATGCTGGGGC TTCAGGACCTTGTTGGCGTGGAAATTGTCTGGGGATCGGCGGTTATTTCCGTACTGGCGGGTGTCGCGGCACTTGTTTAC GCCCTCCGAAGTTTCCGCCTGCCAACTCGGGAGGACGCGATCCTGCGCCTTGATGCGAGCTTGCCCGGCAGGCCGCTGCA GGCGCTGACGGACACGCAGACGATCGGTTCCGGCGATGCCGCCTCAACGGCTGTCTGGCGCGCACATCAAAAACGAATGG CCGCGCGAGCACAATTGGCCAAACCCGTGCCGGCGGATCTGCAAACCCCGAAACGTGATCCCTACGCACTTCGCTATATG GCGCTGTTGGCGTTTGGCATTGCATTGCTGTTTGGCTCGATCTGGCGGGTCGGCTCGGTGTCCGAAATGACCCCCGGCGG GGCGGGCCTTGCCGCCGGACCGGTCTGGGAGGGGTGGGCCGAAAGCCCGCGCTACACCGGGCGGCCGACCATTTATCTCA ACGATATCGACGCAGGCGAACTGGCGGTCCCGGCGGGCAGCCTGATCACCATGCGCATGTATGGCGAGATCGGCGCGCTG ACCCTTACGGAAACCGTGTCCGGGCGCGCGGATGTTGCGGCAGTCTCGGATCCGGCGCAGGATTTCGTCGTCGTGCAGGA TGGGGAGATCACCATCAGTGGCCCCGGCGGACGTAGCTGGCAAGTGGTCGTTATCCCGGATCAGCCACCGGAAATTGCGG TTCTGTCGGATCCCAGTGCCTCTGCGATGGGCGAGATGACGTTGCCGTTTTATGCGGTCGATGATTACGCAGTAGAGGCC GGAGAGGCGCGCTTTTCGCTTGATCTGGCCGCCGTTGATCGCCGCTATGGTCTGACGATTGAGCCTGAATCACGTCCCGA ACTCATCGTGCCTTTGCCGATGCCGATCTCGGGCAGCAGGGCCGAATTCGAGGAAAACCTCATCGAAGATTTCTCGCAGC ATCCATGGGCAAACCTGCCCGTGGCGGTCAGCCTGTCGGCGCTTGATGGTGCCGAGCAGCAGTTTGAAACGGAACCACGC GCGATTGTCCTGCCGGGTCGGCGCTTTTTTGACCCGGTGGCGGCGGCCGTGATCGAGGCACGGCGTGATCTGTTGTGGTC GCGTGCCAACGGGCCAACCATCGCGCAGGTCATGCGCGCTGTCTCTTACGAACCGCAGGAACTGTTTCGCAAAGAGACGG ATGCACTGCGCCTGAGGCAGGTGATCCGGACGCTGGAGTTGCACGCAAAATATGGGATTACGGACGAAAAGCAGCAAGAG CTTGCCGATGACATGTGGGACCTTGCGCTGATCCTCGAAGAGGGCGATCTGGCCGATGCGGCGGAACGGATGCGCCGGGC GCAGGAGCGTCTCAACGAGGCGATCAAGAACGGCGCATCGGACGAGGAAATAGCCGAATTGATGCAGGAACTGCGTCGTG CGACCGAGGATTATTTGCAGCAACTGTCGCGTCAGGCGCAACGCGATCAGCAGGAACAACAGCCCGGTCAGCAGGGCGAT CAGCAAAATTCCATGCAGATGACGCAGGATGATCTGCAGCGCATGATGGACCGGATTCAGGAGTTGATGGAGCAAGGTCG CATGGCCGAAGCCCAGCAAGCGCTGCAAGAGCTTCAGGAAATGATGGAGAACATGCGCGTCACCCAAGGCCAGCAAGGGC AGGGCGGTCAAAGCCCGGGCGAACAAGCCATGGAGGGACTGTCAGAAACGCTGCGCGAGCAGCAGGGTCTGAGCGATCAG GCGTTCCGCGATCTTCAGGAGCAATTCAATCCCAACGCGCAGGCCGGTGAAAATCAGGGTAATGAAGGGCGAAATGGCGG TCAGGGGCGCGGCACCGAGCACGAAGGCGAGGGTCAGGGGCAAGGCGGTCAACAGGACGGACAAGCCCAGAATGGCCAGC CGGGCGAAGGTGGTGAACAGGGCAGCATTGCCGACCGCCAGCAAGACTTGCGCAATGAGTTGAGCCGCCAGCAACAGAAC CTGCCCGGTGCCGGGACCCCCGAAGGTGACGCTGCGCGCGATGCGCTGGATCGTGCCGGCCGTGCGATGGACGACGCGGA GGATGCGCTGCGCCAGAATGATCTGGCGGAGGCGATCGACAATCAGGGACAGGCCATGGAAGCGCTGCGCGAGGGCATGC GCGCTCTGGGCGAAATGATGGCCGAACAGCAGCAAAACGGCCAGCCCGGTCAGGGCACGCAACCGGGCGATCAGCGCGCC GACAGCCGCGATCCCCTGGGACGCGAAGCAGGCAACTCCGGTGTGCAGGGCGATGACAGCCCGCTGGCGTTGAACGATGA TGCCTATGGGCGTGCGCGCGAATTGCTGGACGAAATCCGCCGCAGATCAGGCGACACGGAACGGCCCGAGGTGGAGCGCG ATTACCTCAACCGCTTGCTGGACAGGTTCTAG
Upstream 100 bases:
>100_bases CCCACGTCCAACCTTTGACGAAATGATAAAACGAGATACCATTCCTACTTGGCTCTGATCGTGCGCGTGCAAAGGGGCCA TTGGCAACGGAGCATGACAT
Downstream 100 bases:
>100_bases GGCGTTTGACGAAAAACCCATGGCATGGATTGCTGTGTGAAAAGAAAGAGGTCGATGCGTTGTTTCAGGCGCTCTAGAGC GTCTGACGAAATACCTGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 863; Mature: 862
Protein sequence:
>863_residues MASFSRHDAEKTLKSVRWPLRLTWMGLLTEAVVHSFWPLLSVCLLVMSALMLGLQDLVGVEIVWGSAVISVLAGVAALVY ALRSFRLPTREDAILRLDASLPGRPLQALTDTQTIGSGDAASTAVWRAHQKRMAARAQLAKPVPADLQTPKRDPYALRYM ALLAFGIALLFGSIWRVGSVSEMTPGGAGLAAGPVWEGWAESPRYTGRPTIYLNDIDAGELAVPAGSLITMRMYGEIGAL TLTETVSGRADVAAVSDPAQDFVVVQDGEITISGPGGRSWQVVVIPDQPPEIAVLSDPSASAMGEMTLPFYAVDDYAVEA GEARFSLDLAAVDRRYGLTIEPESRPELIVPLPMPISGSRAEFEENLIEDFSQHPWANLPVAVSLSALDGAEQQFETEPR AIVLPGRRFFDPVAAAVIEARRDLLWSRANGPTIAQVMRAVSYEPQELFRKETDALRLRQVIRTLELHAKYGITDEKQQE LADDMWDLALILEEGDLADAAERMRRAQERLNEAIKNGASDEEIAELMQELRRATEDYLQQLSRQAQRDQQEQQPGQQGD QQNSMQMTQDDLQRMMDRIQELMEQGRMAEAQQALQELQEMMENMRVTQGQQGQGGQSPGEQAMEGLSETLREQQGLSDQ AFRDLQEQFNPNAQAGENQGNEGRNGGQGRGTEHEGEGQGQGGQQDGQAQNGQPGEGGEQGSIADRQQDLRNELSRQQQN LPGAGTPEGDAARDALDRAGRAMDDAEDALRQNDLAEAIDNQGQAMEALREGMRALGEMMAEQQQNGQPGQGTQPGDQRA DSRDPLGREAGNSGVQGDDSPLALNDDAYGRARELLDEIRRRSGDTERPEVERDYLNRLLDRF
Sequences:
>Translated_863_residues MASFSRHDAEKTLKSVRWPLRLTWMGLLTEAVVHSFWPLLSVCLLVMSALMLGLQDLVGVEIVWGSAVISVLAGVAALVY ALRSFRLPTREDAILRLDASLPGRPLQALTDTQTIGSGDAASTAVWRAHQKRMAARAQLAKPVPADLQTPKRDPYALRYM ALLAFGIALLFGSIWRVGSVSEMTPGGAGLAAGPVWEGWAESPRYTGRPTIYLNDIDAGELAVPAGSLITMRMYGEIGAL TLTETVSGRADVAAVSDPAQDFVVVQDGEITISGPGGRSWQVVVIPDQPPEIAVLSDPSASAMGEMTLPFYAVDDYAVEA GEARFSLDLAAVDRRYGLTIEPESRPELIVPLPMPISGSRAEFEENLIEDFSQHPWANLPVAVSLSALDGAEQQFETEPR AIVLPGRRFFDPVAAAVIEARRDLLWSRANGPTIAQVMRAVSYEPQELFRKETDALRLRQVIRTLELHAKYGITDEKQQE LADDMWDLALILEEGDLADAAERMRRAQERLNEAIKNGASDEEIAELMQELRRATEDYLQQLSRQAQRDQQEQQPGQQGD QQNSMQMTQDDLQRMMDRIQELMEQGRMAEAQQALQELQEMMENMRVTQGQQGQGGQSPGEQAMEGLSETLREQQGLSDQ AFRDLQEQFNPNAQAGENQGNEGRNGGQGRGTEHEGEGQGQGGQQDGQAQNGQPGEGGEQGSIADRQQDLRNELSRQQQN LPGAGTPEGDAARDALDRAGRAMDDAEDALRQNDLAEAIDNQGQAMEALREGMRALGEMMAEQQQNGQPGQGTQPGDQRA DSRDPLGREAGNSGVQGDDSPLALNDDAYGRARELLDEIRRRSGDTERPEVERDYLNRLLDRF >Mature_862_residues ASFSRHDAEKTLKSVRWPLRLTWMGLLTEAVVHSFWPLLSVCLLVMSALMLGLQDLVGVEIVWGSAVISVLAGVAALVYA LRSFRLPTREDAILRLDASLPGRPLQALTDTQTIGSGDAASTAVWRAHQKRMAARAQLAKPVPADLQTPKRDPYALRYMA LLAFGIALLFGSIWRVGSVSEMTPGGAGLAAGPVWEGWAESPRYTGRPTIYLNDIDAGELAVPAGSLITMRMYGEIGALT LTETVSGRADVAAVSDPAQDFVVVQDGEITISGPGGRSWQVVVIPDQPPEIAVLSDPSASAMGEMTLPFYAVDDYAVEAG EARFSLDLAAVDRRYGLTIEPESRPELIVPLPMPISGSRAEFEENLIEDFSQHPWANLPVAVSLSALDGAEQQFETEPRA IVLPGRRFFDPVAAAVIEARRDLLWSRANGPTIAQVMRAVSYEPQELFRKETDALRLRQVIRTLELHAKYGITDEKQQEL ADDMWDLALILEEGDLADAAERMRRAQERLNEAIKNGASDEEIAELMQELRRATEDYLQQLSRQAQRDQQEQQPGQQGDQ QNSMQMTQDDLQRMMDRIQELMEQGRMAEAQQALQELQEMMENMRVTQGQQGQGGQSPGEQAMEGLSETLREQQGLSDQA FRDLQEQFNPNAQAGENQGNEGRNGGQGRGTEHEGEGQGQGGQQDGQAQNGQPGEGGEQGSIADRQQDLRNELSRQQQNL PGAGTPEGDAARDALDRAGRAMDDAEDALRQNDLAEAIDNQGQAMEALREGMRALGEMMAEQQQNGQPGQGTQPGDQRAD SRDPLGREAGNSGVQGDDSPLALNDDAYGRARELLDEIRRRSGDTERPEVERDYLNRLLDRF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 94656; Mature: 94525
Theoretical pI: Translated: 4.26; Mature: 4.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASFSRHDAEKTLKSVRWPLRLTWMGLLTEAVVHSFWPLLSVCLLVMSALMLGLQDLVGV CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EIVWGSAVISVLAGVAALVYALRSFRLPTREDAILRLDASLPGRPLQALTDTQTIGSGDA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCCCCH ASTAVWRAHQKRMAARAQLAKPVPADLQTPKRDPYALRYMALLAFGIALLFGSIWRVGSV HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC SEMTPGGAGLAAGPVWEGWAESPRYTGRPTIYLNDIDAGELAVPAGSLITMRMYGEIGAL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEECCCCCEEEEEECCCCCCE TLTETVSGRADVAAVSDPAQDFVVVQDGEITISGPGGRSWQVVVIPDQPPEIAVLSDPSA EEHHHHCCCCCCCCCCCCCCCEEEEECCEEEEECCCCCEEEEEEECCCCCCEEEECCCCC SAMGEMTLPFYAVDDYAVEAGEARFSLDLAAVDRRYGLTIEPESRPELIVPLPMPISGSR HHCCCCCCCEEECCHHHHHCCCCCEEEHHHHHHHHCCCEECCCCCCCEEEECCCCCCCCH AEFEENLIEDFSQHPWANLPVAVSLSALDGAEQQFETEPRAIVLPGRRFFDPVAAAVIEA HHHHHHHHHHHHHCCCCCCCCEEEEHHHCCCHHHHCCCCCEEEECCHHHHHHHHHHHHHH RRDLLWSRANGPTIAQVMRAVSYEPQELFRKETDALRLRQVIRTLELHAKYGITDEKQQE HHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH LADDMWDLALILEEGDLADAAERMRRAQERLNEAIKNGASDEEIAELMQELRRATEDYLQ HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH QLSRQAQRDQQEQQPGQQGDQQNSMQMTQDDLQRMMDRIQELMEQGRMAEAQQALQELQE HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH MMENMRVTQGQQGQGGQSPGEQAMEGLSETLREQQGLSDQAFRDLQEQFNPNAQAGENQG HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCC NEGRNGGQGRGTEHEGEGQGQGGQQDGQAQNGQPGEGGEQGSIADRQQDLRNELSRQQQN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC LPGAGTPEGDAARDALDRAGRAMDDAEDALRQNDLAEAIDNQGQAMEALREGMRALGEMM CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH AEQQQNGQPGQGTQPGDQRADSRDPLGREAGNSGVQGDDSPLALNDDAYGRARELLDEIR HHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHH RRSGDTERPEVERDYLNRLLDRF HHCCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure ASFSRHDAEKTLKSVRWPLRLTWMGLLTEAVVHSFWPLLSVCLLVMSALMLGLQDLVGV CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EIVWGSAVISVLAGVAALVYALRSFRLPTREDAILRLDASLPGRPLQALTDTQTIGSGDA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHCCCCCCCCCH ASTAVWRAHQKRMAARAQLAKPVPADLQTPKRDPYALRYMALLAFGIALLFGSIWRVGSV HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC SEMTPGGAGLAAGPVWEGWAESPRYTGRPTIYLNDIDAGELAVPAGSLITMRMYGEIGAL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEECCCCCEEEEEECCCCCCE TLTETVSGRADVAAVSDPAQDFVVVQDGEITISGPGGRSWQVVVIPDQPPEIAVLSDPSA EEHHHHCCCCCCCCCCCCCCCEEEEECCEEEEECCCCCEEEEEEECCCCCCEEEECCCCC SAMGEMTLPFYAVDDYAVEAGEARFSLDLAAVDRRYGLTIEPESRPELIVPLPMPISGSR HHCCCCCCCEEECCHHHHHCCCCCEEEHHHHHHHHCCCEECCCCCCCEEEECCCCCCCCH AEFEENLIEDFSQHPWANLPVAVSLSALDGAEQQFETEPRAIVLPGRRFFDPVAAAVIEA HHHHHHHHHHHHHCCCCCCCCEEEEHHHCCCHHHHCCCCCEEEECCHHHHHHHHHHHHHH RRDLLWSRANGPTIAQVMRAVSYEPQELFRKETDALRLRQVIRTLELHAKYGITDEKQQE HHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH LADDMWDLALILEEGDLADAAERMRRAQERLNEAIKNGASDEEIAELMQELRRATEDYLQ HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH QLSRQAQRDQQEQQPGQQGDQQNSMQMTQDDLQRMMDRIQELMEQGRMAEAQQALQELQE HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH MMENMRVTQGQQGQGGQSPGEQAMEGLSETLREQQGLSDQAFRDLQEQFNPNAQAGENQG HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCC NEGRNGGQGRGTEHEGEGQGQGGQQDGQAQNGQPGEGGEQGSIADRQQDLRNELSRQQQN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC LPGAGTPEGDAARDALDRAGRAMDDAEDALRQNDLAEAIDNQGQAMEALREGMRALGEMM CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH AEQQQNGQPGQGTQPGDQRADSRDPLGREAGNSGVQGDDSPLALNDDAYGRARELLDEIR HHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHH RRSGDTERPEVERDYLNRLLDRF HHCCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA