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The map label for this gene is bepF [H]

Identifier: 110678894

GI number: 110678894

Start: 1533556

End: 1534785

Strand: Reverse

Name: bepF [H]

Synonym: RD1_1588

Alternate gene names: 110678894

Gene position: 1534785-1533556 (Counterclockwise)

Preceding gene: 110678895

Following gene: 110678893

Centisome position: 37.13

GC content: 59.02

Gene sequence:

>1230_bases
GTGGAAAACACATGCGCCATCCCTTTTTCGCGATCAGATGGAAAAAACGTTGACGGGCCAAGAGATAGGTTTAGCTTCGC
GCACAACCGGAGGCACTGCCCTATGCCGCTTTTGACGCGACTTTTCATTTCATTCCTTGTTCTGTGGATCGGCGTAGTCG
CAAATGCTCAAAATGGGCCGCCGCCGGTCACTTTGGCCAACCCTGTCGTGAAGACCATCGTCGAAGACGACGAGTTTGTC
GGACGCTTCGAAGCCGAAGGCGAAGTAATCGTGCGCGCCCGGGTGTCGGGCTATCTGCAGACGGTGCACTTTGATGACGG
AAGCCGGGTCGAAGCAGGGCAGCTTTTGTACACGATTGACCAGCGCCGCTTTCGCACTGCTTTGCGTCAGGCACAGGCGC
AGATCGACGTGGCACAAGCCACCTATGATTTCACGTTGGAGCAGTTGGAGCGTGCAGAATCTCTGATCCTGAACGGAAAC
ATTTCGCAAAGCGCGGTCGACTCCCGCAGAGAAGCCTATCTCGCCGCGCAGGGCGCTCTTGAGCAGGCCCGTGCAGCCCT
CGAACTGGCGCAGATCGACCTTGAGTTCACACAGATCACAGCCCCCATGTCAGGCCGGATCGACCAGACGCAGGTTGACC
CCGGCAACCTTGTGCTTGCCGACCAGACGGAGCTTACGTCGATCGTATCCTCTGATCCGATCTACTTCTTTTTTGATATT
GATGAGCGCTATTTTCTTGCCTACGCCCGCGACGCCCGCGCACGCGGCGCTTCCCTGCAAGAGGGTGGCGGGCAGCTTCA
GGTCAAAGTATCCCTGTCAGACGAATCCATTCCCCCGATCGACGGCACGCTGGACTTTTCGGAAAACAGGATCGACGCGG
AAACCGGCACGATGCGTGTGCGTGCCGTCTTGGACAACCCCGATGAGATGCTGACGCCGGGTCTGTTTGGTCGGGTCAAT
GTACCGGGGTCCCTGCCCTACGAGGGGATTTTGGTGCCCGATGCGGCGATTGTCGCAGACCAGAACCGGCGCCTTGTGAT
GAGTGTCGATGCAGAGGGCAACGTCACGCCCATTCCTGTGCGCCCCGGTCCGCGCATTGATGGCTACCGCGTGATACGCG
AAGGGCTCGACGGGAGCGAGTTGATCGTGATCGAAGGCATCATCCGCGCACGCCCCGGCAGCGTTGTCACGCCGGAACGG
GTGGAATTACCGCCGGTTGCGGAAAACTGA

Upstream 100 bases:

>100_bases
GAGCCACCCGAATAATACACGGTTATGGCATTTATCCCGGTGCGGGAGCCTGAAACTTGTCAAAACCAAACCTTTCGTAG
GTATTGTTCACACTGCCGGG

Downstream 100 bases:

>100_bases
AATGGGCCGTTTTTTCGTAAGCCGACCGATATTCGCCATCGTCATGTCGGTCATCATGACCATTGTCGGCATGCTCGCCT
ATACCCAATTGCCCATCGAG

Product: RND efflux membrane fusion protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MENTCAIPFSRSDGKNVDGPRDRFSFAHNRRHCPMPLLTRLFISFLVLWIGVVANAQNGPPPVTLANPVVKTIVEDDEFV
GRFEAEGEVIVRARVSGYLQTVHFDDGSRVEAGQLLYTIDQRRFRTALRQAQAQIDVAQATYDFTLEQLERAESLILNGN
ISQSAVDSRREAYLAAQGALEQARAALELAQIDLEFTQITAPMSGRIDQTQVDPGNLVLADQTELTSIVSSDPIYFFFDI
DERYFLAYARDARARGASLQEGGGQLQVKVSLSDESIPPIDGTLDFSENRIDAETGTMRVRAVLDNPDEMLTPGLFGRVN
VPGSLPYEGILVPDAAIVADQNRRLVMSVDAEGNVTPIPVRPGPRIDGYRVIREGLDGSELIVIEGIIRARPGSVVTPER
VELPPVAEN

Sequences:

>Translated_409_residues
MENTCAIPFSRSDGKNVDGPRDRFSFAHNRRHCPMPLLTRLFISFLVLWIGVVANAQNGPPPVTLANPVVKTIVEDDEFV
GRFEAEGEVIVRARVSGYLQTVHFDDGSRVEAGQLLYTIDQRRFRTALRQAQAQIDVAQATYDFTLEQLERAESLILNGN
ISQSAVDSRREAYLAAQGALEQARAALELAQIDLEFTQITAPMSGRIDQTQVDPGNLVLADQTELTSIVSSDPIYFFFDI
DERYFLAYARDARARGASLQEGGGQLQVKVSLSDESIPPIDGTLDFSENRIDAETGTMRVRAVLDNPDEMLTPGLFGRVN
VPGSLPYEGILVPDAAIVADQNRRLVMSVDAEGNVTPIPVRPGPRIDGYRVIREGLDGSELIVIEGIIRARPGSVVTPER
VELPPVAEN
>Mature_409_residues
MENTCAIPFSRSDGKNVDGPRDRFSFAHNRRHCPMPLLTRLFISFLVLWIGVVANAQNGPPPVTLANPVVKTIVEDDEFV
GRFEAEGEVIVRARVSGYLQTVHFDDGSRVEAGQLLYTIDQRRFRTALRQAQAQIDVAQATYDFTLEQLERAESLILNGN
ISQSAVDSRREAYLAAQGALEQARAALELAQIDLEFTQITAPMSGRIDQTQVDPGNLVLADQTELTSIVSSDPIYFFFDI
DERYFLAYARDARARGASLQEGGGQLQVKVSLSDESIPPIDGTLDFSENRIDAETGTMRVRAVLDNPDEMLTPGLFGRVN
VPGSLPYEGILVPDAAIVADQNRRLVMSVDAEGNVTPIPVRPGPRIDGYRVIREGLDGSELIVIEGIIRARPGSVVTPER
VELPPVAEN

Specific function: May contribute to resistance to some drugs, such as deoxycholate, sodium dodecyl sulfate and nalidixic acid, in the absence of BepD and BepE [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87082036, Length=341, Percent_Identity=30.2052785923754, Blast_Score=138, Evalue=6e-34,
Organism=Escherichia coli, GI1789665, Length=376, Percent_Identity=29.5212765957447, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1786668, Length=328, Percent_Identity=33.5365853658537, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789929, Length=305, Percent_Identity=25.9016393442623, Blast_Score=102, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 44946; Mature: 44946

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENTCAIPFSRSDGKNVDGPRDRFSFAHNRRHCPMPLLTRLFISFLVLWIGVVANAQNGP
CCCCEECEECCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
PPVTLANPVVKTIVEDDEFVGRFEAEGEVIVRARVSGYLQTVHFDDGSRVEAGQLLYTID
CCEEECCHHHHHHHCCCHHCEEEECCCCEEEEEEECCEEEEEEECCCCCEECCCEEEEHH
QRRFRTALRQAQAQIDVAQATYDFTLEQLERAESLILNGNISQSAVDSRREAYLAAQGAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHH
EQARAALELAQIDLEFTQITAPMSGRIDQTQVDPGNLVLADQTELTSIVSSDPIYFFFDI
HHHHHHHHHHHEEEEEEEEECCCCCCCCCEECCCCCEEEECCHHHHHHHCCCCEEEEEEC
DERYFLAYARDARARGASLQEGGGQLQVKVSLSDESIPPIDGTLDFSENRIDAETGTMRV
CCEEEEEEECCHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCEECCCCCEECCCCCCEEE
RAVLDNPDEMLTPGLFGRVNVPGSLPYEGILVPDAAIVADQNRRLVMSVDAEGNVTPIPV
EEEECCCHHHCCCCCCEEEECCCCCCCCCEECCCEEEEECCCCEEEEEECCCCCEEEECC
RPGPRIDGYRVIREGLDGSELIVIEGIIRARPGSVVTPERVELPPVAEN
CCCCCCCHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MENTCAIPFSRSDGKNVDGPRDRFSFAHNRRHCPMPLLTRLFISFLVLWIGVVANAQNGP
CCCCEECEECCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
PPVTLANPVVKTIVEDDEFVGRFEAEGEVIVRARVSGYLQTVHFDDGSRVEAGQLLYTID
CCEEECCHHHHHHHCCCHHCEEEECCCCEEEEEEECCEEEEEEECCCCCEECCCEEEEHH
QRRFRTALRQAQAQIDVAQATYDFTLEQLERAESLILNGNISQSAVDSRREAYLAAQGAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHH
EQARAALELAQIDLEFTQITAPMSGRIDQTQVDPGNLVLADQTELTSIVSSDPIYFFFDI
HHHHHHHHHHHEEEEEEEEECCCCCCCCCEECCCCCEEEECCHHHHHHHCCCCEEEEEEC
DERYFLAYARDARARGASLQEGGGQLQVKVSLSDESIPPIDGTLDFSENRIDAETGTMRV
CCEEEEEEECCHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCEECCCCCEECCCCCCEEE
RAVLDNPDEMLTPGLFGRVNVPGSLPYEGILVPDAAIVADQNRRLVMSVDAEGNVTPIPV
EEEECCCHHHCCCCCCEEEECCCCCCCCCEECCCEEEEECCCCEEEEEECCCCCEEEECC
RPGPRIDGYRVIREGLDGSELIVIEGIIRARPGSVVTPERVELPPVAEN
CCCCCCCHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12271122 [H]