Click here to switch to the map view.

The map label for this gene is 110678708

Identifier: 110678708

GI number: 110678708

Start: 1332585

End: 1333157

Strand: Reverse

Name: 110678708

Synonym: RD1_1389

Alternate gene names: NA

Gene position: 1333157-1332585 (Counterclockwise)

Preceding gene: 110678709

Following gene: 110678707

Centisome position: 32.26

GC content: 61.26

Gene sequence:

>573_bases
ATGGTCGTTTTGAATAAAATCTACACCAAGACCGGCGACGCGGGCGAAACCGCGCTCGGCAATGGTGCCCGGGTGGCAAA
ACACGCGGTGCGCGTGGCGAGCTACGGCACCTCTGATGAGTTGAATTCCTTTGTCGGCGTTGCCCGGCTGGAAGCCGAAG
GCGAGATGGATGAAGCGCTGAGCCGCATACAGAACGACCTGTTTGACCTGGGCGCGGACCTGTGCCGACCCGACATGGAT
CAGGACGCCGAAGCGGAATATCCGCCCCTGCGGATGATCGAAGCGCAGGTCGAACGGCTGGAAAGCGAAATCGACGCGAT
GAACAAGAACCTTGAACCGCTGCGCAGTTTCATCCTGCCGGGCGGGTCGCGACTGGCCGCGCATTTGCATGTGTGCCGGA
CCGTTTCGCGTCGCGCCGAACGCCTGTGCGTCGAACTGGCCACGATGGAGGCGATCAACCCGTCGGCCGTCAAATACCTC
AACCGGCTGAGCGATTGGTTCTTTGTTGCCGCGCGCACGGTCAATAATGGTGGCAAGGATGACGTGCTCTGGGTGCCGGG
CGCAAATCGCTGA

Upstream 100 bases:

>100_bases
CTCGAACAAACTGATGCGCTACCGGATCGGCGCGCAGTTCATCGCGGTGATCTTTATCGTGTTGTTTGTTTATTTTCGAA
ATCAGGGGAGCTAGGCGGCA

Downstream 100 bases:

>100_bases
TCGACGCACCCCGCTGGATGTCGGGCACCGGTGCGCCACACAAACACCGAAACGTGGCGTATCAATGACAGAACGTGACG
ATTTTACACTGTTTCACCGG

Product: cob(I)alamin adenosyltransferase, putative

Products: NA

Alternate protein names: Cob(I)alamin adenosyltransferase [H]

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MVVLNKIYTKTGDAGETALGNGARVAKHAVRVASYGTSDELNSFVGVARLEAEGEMDEALSRIQNDLFDLGADLCRPDMD
QDAEAEYPPLRMIEAQVERLESEIDAMNKNLEPLRSFILPGGSRLAAHLHVCRTVSRRAERLCVELATMEAINPSAVKYL
NRLSDWFFVAARTVNNGGKDDVLWVPGANR

Sequences:

>Translated_190_residues
MVVLNKIYTKTGDAGETALGNGARVAKHAVRVASYGTSDELNSFVGVARLEAEGEMDEALSRIQNDLFDLGADLCRPDMD
QDAEAEYPPLRMIEAQVERLESEIDAMNKNLEPLRSFILPGGSRLAAHLHVCRTVSRRAERLCVELATMEAINPSAVKYL
NRLSDWFFVAARTVNNGGKDDVLWVPGANR
>Mature_190_residues
MVVLNKIYTKTGDAGETALGNGARVAKHAVRVASYGTSDELNSFVGVARLEAEGEMDEALSRIQNDLFDLGADLCRPDMD
QDAEAEYPPLRMIEAQVERLESEIDAMNKNLEPLRSFILPGGSRLAAHLHVCRTVSRRAERLCVELATMEAINPSAVKYL
NRLSDWFFVAARTVNNGGKDDVLWVPGANR

Specific function: Unknown

COG id: COG2096

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cob(I)alamin adenosyltransferase family [H]

Homologues:

Organism=Homo sapiens, GI16418349, Length=173, Percent_Identity=38.728323699422, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI115534154, Length=168, Percent_Identity=39.2857142857143, Blast_Score=101, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017858
- InterPro:   IPR002779
- InterPro:   IPR016030
- ProDom:   PD007457 [H]

Pfam domain/function: PF01923 Cob_adeno_trans [H]

EC number: =2.5.1.17 [H]

Molecular weight: Translated: 20920; Mature: 20920

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVLNKIYTKTGDAGETALGNGARVAKHAVRVASYGTSDELNSFVGVARLEAEGEMDEAL
CEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
SRIQNDLFDLGADLCRPDMDQDAEAEYPPLRMIEAQVERLESEIDAMNKNLEPLRSFILP
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
GGSRLAAHLHVCRTVSRRAERLCVELATMEAINPSAVKYLNRLSDWFFVAARTVNNGGKD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
DVLWVPGANR
CEEECCCCCC
>Mature Secondary Structure
MVVLNKIYTKTGDAGETALGNGARVAKHAVRVASYGTSDELNSFVGVARLEAEGEMDEAL
CEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
SRIQNDLFDLGADLCRPDMDQDAEAEYPPLRMIEAQVERLESEIDAMNKNLEPLRSFILP
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
GGSRLAAHLHVCRTVSRRAERLCVELATMEAINPSAVKYLNRLSDWFFVAARTVNNGGKD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
DVLWVPGANR
CEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]