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The map label for this gene is dctM [C]

Identifier: 110678612

GI number: 110678612

Start: 1249852

End: 1251207

Strand: Direct

Name: dctM [C]

Synonym: RD1_1288

Alternate gene names: 110678612

Gene position: 1249852-1251207 (Clockwise)

Preceding gene: 110678611

Following gene: 110678613

Centisome position: 30.24

GC content: 58.41

Gene sequence:

>1356_bases
ATGACCGCGTTTCTTGGCCTCTTACCCTTTGCCCAGATGGACCGGCTCGAACTTGGGTTCTGGTCGTTTCTGGTGCTGCT
GGGCATGGTGTTTTTGCGCGCGCCGATTGGGCTGGCGATGCTGCTCTGCGGGTTTGGGGGCTGGTATTACGCGATGAATG
GCAACCCGGTGCCGTTGCTTGCGAAACTCAAATCCGAAACCTACACCACCTTTTCGAATTACTCCCTGACGATCATCCCG
CTGTTTCTGCTGATGGGGCAGTTTGCCACCCTGTCCGGCCTGTCGCAGGCGCTGTTCAAGGCGGCGGAGAGCTTTCTGGG
CCATCGGCGCGGTGGCGTTGCCATGGCGGCCATTGGCGCTTGCGCGGGATTTGGTGCGATTTGCGGATCGTCTTTGGCAA
CGGCGGCCACGATGTCCAAGGTCGCCTTGCCCGAATTGCGCCGCTACGGCTATTCCGGCGGGTTTTCAACGGCGACGCTT
GCCGCTGGCGGGACACTTGGCATTCTGATCCCGCCTTCGGTTATTCTGGTGATCTACGCAATCATCACCGAGCAGAACAT
TGCCAAGCTGTTTCTGGCGGCGTTCATTCCCGGCATTCTCGCGGCGCTGGGGTATATGCTCACCATCTCACTATATGTGC
GCCTTTACCCCGATGCAGCCGGCACGCGCGCGCCTGTGCCCATGGGCGATCGTTGGCGCGCTTTGGGGGCGACATGGCCT
GTGCTGGCCATTTTTGGCGTGGTCGTCGGGGGCATATATCTGGGCTGGTTTACCCCGACCGAGGGGGCCGCGGTCGGTGC
GGCAGGTACAGGGCTGATTGCCGTGGTGTCGCGCAGCCTGACTTGGCAGACGTTCAAGGAATGCCTCTTGGGGACGGGCC
GCACGACCGCGATGATCTTTTTCATCGTGTTGGGGGCCAGTTTTTATAATGGATTTCTGGCGCTCTCCGGTGTGCCGCAG
TTCATGGCAGACTGGGTGCTGGCGCAGGACTATAGCCCGTGGTTTGTCCTGTCGATCATCCTGCTCTTTTATCTCGTGTT
CGGCTGCCTGATGGACAGCCTGTCGATGATCCTGCTGACCGTTCCGATCTTTTTCCCGGTAATCTCGGCGATGGATTTCG
GGATGTCGCCGGAACATGTGGCCATCTGGTTCGGTATCCTCGTTCTGATCGTGGTTGAGGTGGGCCTGATCACACCGCCG
GTTGGCATGAACCTGTTCATCATAAACGCCATGGATCGTGAAACGCCGATTACACAAACATACAAAGCCGTATTGTTCTT
TGTTGGCTCTGACATCCTGCGGGTCGTGGTGTTGGTCGCGTTTCCAGCGATTACGCTGTTTCTAATTCCCGCTTAA

Upstream 100 bases:

>100_bases
GCTTCTGTTGTGACCTGCATCGTGGCGGTCTATTGTGCGATTATGCGCCTGTGTGAAAGCGTGACGGGCCGCAGCCTGTT
GCCGCAGGTATAGCCCTTTA

Downstream 100 bases:

>100_bases
AGTGTATTACTTCGCTTAAAAGGCGAATTGCCCGAGGAATTCTTGCCGGAACAACTTGCGAAGGGCGGCAGTTAGTGCAG
GATGTCCCCGGTGACGTTTG

Product: TRAP dicarboxylate transporter, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 450

Protein sequence:

>451_residues
MTAFLGLLPFAQMDRLELGFWSFLVLLGMVFLRAPIGLAMLLCGFGGWYYAMNGNPVPLLAKLKSETYTTFSNYSLTIIP
LFLLMGQFATLSGLSQALFKAAESFLGHRRGGVAMAAIGACAGFGAICGSSLATAATMSKVALPELRRYGYSGGFSTATL
AAGGTLGILIPPSVILVIYAIITEQNIAKLFLAAFIPGILAALGYMLTISLYVRLYPDAAGTRAPVPMGDRWRALGATWP
VLAIFGVVVGGIYLGWFTPTEGAAVGAAGTGLIAVVSRSLTWQTFKECLLGTGRTTAMIFFIVLGASFYNGFLALSGVPQ
FMADWVLAQDYSPWFVLSIILLFYLVFGCLMDSLSMILLTVPIFFPVISAMDFGMSPEHVAIWFGILVLIVVEVGLITPP
VGMNLFIINAMDRETPITQTYKAVLFFVGSDILRVVVLVAFPAITLFLIPA

Sequences:

>Translated_451_residues
MTAFLGLLPFAQMDRLELGFWSFLVLLGMVFLRAPIGLAMLLCGFGGWYYAMNGNPVPLLAKLKSETYTTFSNYSLTIIP
LFLLMGQFATLSGLSQALFKAAESFLGHRRGGVAMAAIGACAGFGAICGSSLATAATMSKVALPELRRYGYSGGFSTATL
AAGGTLGILIPPSVILVIYAIITEQNIAKLFLAAFIPGILAALGYMLTISLYVRLYPDAAGTRAPVPMGDRWRALGATWP
VLAIFGVVVGGIYLGWFTPTEGAAVGAAGTGLIAVVSRSLTWQTFKECLLGTGRTTAMIFFIVLGASFYNGFLALSGVPQ
FMADWVLAQDYSPWFVLSIILLFYLVFGCLMDSLSMILLTVPIFFPVISAMDFGMSPEHVAIWFGILVLIVVEVGLITPP
VGMNLFIINAMDRETPITQTYKAVLFFVGSDILRVVVLVAFPAITLFLIPA
>Mature_450_residues
TAFLGLLPFAQMDRLELGFWSFLVLLGMVFLRAPIGLAMLLCGFGGWYYAMNGNPVPLLAKLKSETYTTFSNYSLTIIPL
FLLMGQFATLSGLSQALFKAAESFLGHRRGGVAMAAIGACAGFGAICGSSLATAATMSKVALPELRRYGYSGGFSTATLA
AGGTLGILIPPSVILVIYAIITEQNIAKLFLAAFIPGILAALGYMLTISLYVRLYPDAAGTRAPVPMGDRWRALGATWPV
LAIFGVVVGGIYLGWFTPTEGAAVGAAGTGLIAVVSRSLTWQTFKECLLGTGRTTAMIFFIVLGASFYNGFLALSGVPQF
MADWVLAQDYSPWFVLSIILLFYLVFGCLMDSLSMILLTVPIFFPVISAMDFGMSPEHVAIWFGILVLIVVEVGLITPPV
GMNLFIINAMDRETPITQTYKAVLFFVGSDILRVVVLVAFPAITLFLIPA

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=389, Percent_Identity=26.9922879177378, Blast_Score=122, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 48282; Mature: 48151

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAFLGLLPFAQMDRLELGFWSFLVLLGMVFLRAPIGLAMLLCGFGGWYYAMNGNPVPLL
CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
AKLKSETYTTFSNYSLTIIPLFLLMGQFATLSGLSQALFKAAESFLGHRRGGVAMAAIGA
HHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
CAGFGAICGSSLATAATMSKVALPELRRYGYSGGFSTATLAAGGTLGILIPPSVILVIYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEECCCEEEEECCHHHHHHHHH
IITEQNIAKLFLAAFIPGILAALGYMLTISLYVRLYPDAAGTRAPVPMGDRWRALGATWP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCHH
VLAIFGVVVGGIYLGWFTPTEGAAVGAAGTGLIAVVSRSLTWQTFKECLLGTGRTTAMIF
HHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHH
FIVLGASFYNGFLALSGVPQFMADWVLAQDYSPWFVLSIILLFYLVFGCLMDSLSMILLT
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPIFFPVISAMDFGMSPEHVAIWFGILVLIVVEVGLITPPVGMNLFIINAMDRETPITQT
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHH
YKAVLFFVGSDILRVVVLVAFPAITLFLIPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TAFLGLLPFAQMDRLELGFWSFLVLLGMVFLRAPIGLAMLLCGFGGWYYAMNGNPVPLL
CCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
AKLKSETYTTFSNYSLTIIPLFLLMGQFATLSGLSQALFKAAESFLGHRRGGVAMAAIGA
HHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
CAGFGAICGSSLATAATMSKVALPELRRYGYSGGFSTATLAAGGTLGILIPPSVILVIYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEECCCEEEEECCHHHHHHHHH
IITEQNIAKLFLAAFIPGILAALGYMLTISLYVRLYPDAAGTRAPVPMGDRWRALGATWP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCHH
VLAIFGVVVGGIYLGWFTPTEGAAVGAAGTGLIAVVSRSLTWQTFKECLLGTGRTTAMIF
HHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHH
FIVLGASFYNGFLALSGVPQFMADWVLAQDYSPWFVLSIILLFYLVFGCLMDSLSMILLT
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VPIFFPVISAMDFGMSPEHVAIWFGILVLIVVEVGLITPPVGMNLFIINAMDRETPITQT
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHH
YKAVLFFVGSDILRVVVLVAFPAITLFLIPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]