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The map label for this gene is rdxB [H]

Identifier: 110678599

GI number: 110678599

Start: 1236222

End: 1237658

Strand: Direct

Name: rdxB [H]

Synonym: RD1_1274

Alternate gene names: 110678599

Gene position: 1236222-1237658 (Clockwise)

Preceding gene: 110678598

Following gene: 110678600

Centisome position: 29.91

GC content: 59.57

Gene sequence:

>1437_bases
TTGTCCGACCAGACAACACCACCCAGCCTATACGCCGCCCGCGAGCCGATTTTTCCGCGCCGGGTTTCGGGTCCGTTTCG
CAATTTCAAATGGATCGTCCTGATCGTTACGCTGGGCATCTATTACGTCGTGCCGTGGATCAGGTGGGACCGGGGACCGG
ATTTGCCAAATCAGGCGGTCTTGCTGGATCTGGCAAACCGCCGGTTCTACTTTTTCTGGATCGATATCTGGAGCCATGAA
TTCTATTTCGTGGCCGGTCTGTTGATCATGGCGGGTCTTGGGTTGTTCCTGTTCACCTCGGCGCTGGGGCGTGTGTGGTG
TGGCTATGCCTGCCCGCAGACCGTCTGGACCGACCTGTTCATTCTGGTGGAACGCTGGATCGAAGGGGACCGCAACGCGC
GGCTGCGTCTGCATCGCCAGGAAAAGATGGATGCGCGCAAGCTGCGGCTCAGGCTGACGAAATGGACGGTCTGGCTGTTC
ATAGCTGTTGCGACCGGTGGGGCTTGGGTGTTCTACTTTGCCGATGCGCCGACGCTTCTTGTCGATCTGTTCACGGGGCA
GGCGGCGGCTGTGGCCTATATCACGGTGGCGATCCTGACCGCGACAACCTTTGTTTTCGGTGGGTTCGCGCGCGAACAAA
TCTGCATTTACGCCTGCCCATGGCCGCGCATTCAGGGCGCGATGATGGATGAGGATACGTTGACCGTTGCCTATCGGCCA
TGGCGCGGGGAGCCGCGCAAGCACTCCGAAGAAGTCAAGGCGGGCGAGCCGATGGGTGACTGCATCGACTGCATGGCTTG
CGTGAACGTCTGCCCTGTGGGGATCGACATTCGCGACGGGCAGCAGATGGAATGCATCACCTGCGCGCTTTGCATTGATG
CCTGCGACGACGTCATGGCCAAGATCGGCAAGCCGCGCGGATTGATTGACTACCTTGCCCTGTCGGATGAGAAACTGGAG
CGCGCGGGCAATCCGCCACGGCCGGTCTGGAAACACATTTTCCGCCCGCGGACCCTGATTTACACCGCGCTTTGGGGTGG
TGTTGGTGTGGCTTTGCTTGTGGCGCTCTTTATCCGGGCGGACATCGAAGTCACCGTCGCACCGGTGCGCAACCCCACAT
TTGTCACCATGTCTGACGGATCCATCCGCAACACATATGACATCCGCCTGCGCAACAAGAACAACGAAGAGCGGCTGTTC
CGAATTGCCGTGCAAGGTGATCCGGCTGTGCGCATCCAGCTGGAAGGCACGCCCTACGGGTCGGTTTCCGTCGGCGCGGA
TGCCTCACACCTTCAGCGGGTCTATGTCATCGCGCCGCCAAACTCGGCACCGGCAGAAGGCGATCACACCGATCTGCGGT
TCTGGATCGAGGACCTCACCAATGGTGATCGCGCCTACAAAGACAGTAACTTCACAGGGAAGGGTACAAACCAATGA

Upstream 100 bases:

>100_bases
CCACGTCACGAAAAAGCGGGCGCGGTTTTGATGCAAATCAAGGCCGCGCCTTATGCAATCAGACTAGGTTGATCGTGACC
GCAACCCGGAGTGAACCGCT

Downstream 100 bases:

>100_bases
CCAAGGAATTGACCGGACGCCACGTCGCGTTCATCTTATGCAGTGCATTTTTCGTGATCATCACTGTCAACCTGACCCTG
GCGTTCAACGCCGTGAGCAC

Product: RdxB protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 477

Protein sequence:

>478_residues
MSDQTTPPSLYAAREPIFPRRVSGPFRNFKWIVLIVTLGIYYVVPWIRWDRGPDLPNQAVLLDLANRRFYFFWIDIWSHE
FYFVAGLLIMAGLGLFLFTSALGRVWCGYACPQTVWTDLFILVERWIEGDRNARLRLHRQEKMDARKLRLRLTKWTVWLF
IAVATGGAWVFYFADAPTLLVDLFTGQAAAVAYITVAILTATTFVFGGFAREQICIYACPWPRIQGAMMDEDTLTVAYRP
WRGEPRKHSEEVKAGEPMGDCIDCMACVNVCPVGIDIRDGQQMECITCALCIDACDDVMAKIGKPRGLIDYLALSDEKLE
RAGNPPRPVWKHIFRPRTLIYTALWGGVGVALLVALFIRADIEVTVAPVRNPTFVTMSDGSIRNTYDIRLRNKNNEERLF
RIAVQGDPAVRIQLEGTPYGSVSVGADASHLQRVYVIAPPNSAPAEGDHTDLRFWIEDLTNGDRAYKDSNFTGKGTNQ

Sequences:

>Translated_478_residues
MSDQTTPPSLYAAREPIFPRRVSGPFRNFKWIVLIVTLGIYYVVPWIRWDRGPDLPNQAVLLDLANRRFYFFWIDIWSHE
FYFVAGLLIMAGLGLFLFTSALGRVWCGYACPQTVWTDLFILVERWIEGDRNARLRLHRQEKMDARKLRLRLTKWTVWLF
IAVATGGAWVFYFADAPTLLVDLFTGQAAAVAYITVAILTATTFVFGGFAREQICIYACPWPRIQGAMMDEDTLTVAYRP
WRGEPRKHSEEVKAGEPMGDCIDCMACVNVCPVGIDIRDGQQMECITCALCIDACDDVMAKIGKPRGLIDYLALSDEKLE
RAGNPPRPVWKHIFRPRTLIYTALWGGVGVALLVALFIRADIEVTVAPVRNPTFVTMSDGSIRNTYDIRLRNKNNEERLF
RIAVQGDPAVRIQLEGTPYGSVSVGADASHLQRVYVIAPPNSAPAEGDHTDLRFWIEDLTNGDRAYKDSNFTGKGTNQ
>Mature_477_residues
SDQTTPPSLYAAREPIFPRRVSGPFRNFKWIVLIVTLGIYYVVPWIRWDRGPDLPNQAVLLDLANRRFYFFWIDIWSHEF
YFVAGLLIMAGLGLFLFTSALGRVWCGYACPQTVWTDLFILVERWIEGDRNARLRLHRQEKMDARKLRLRLTKWTVWLFI
AVATGGAWVFYFADAPTLLVDLFTGQAAAVAYITVAILTATTFVFGGFAREQICIYACPWPRIQGAMMDEDTLTVAYRPW
RGEPRKHSEEVKAGEPMGDCIDCMACVNVCPVGIDIRDGQQMECITCALCIDACDDVMAKIGKPRGLIDYLALSDEKLER
AGNPPRPVWKHIFRPRTLIYTALWGGVGVALLVALFIRADIEVTVAPVRNPTFVTMSDGSIRNTYDIRLRNKNNEERLFR
IAVQGDPAVRIQLEGTPYGSVSVGADASHLQRVYVIAPPNSAPAEGDHTDLRFWIEDLTNGDRAYKDSNFTGKGTNQ

Specific function: Involved in a membrane generated redox signal; required to maintain repression of photosynthesis gene expression in the presence of oxygen [H]

COG id: COG0348

COG function: function code C; Polyferredoxin

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR014116
- InterPro:   IPR013783 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54019; Mature: 53888

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDQTTPPSLYAAREPIFPRRVSGPFRNFKWIVLIVTLGIYYVVPWIRWDRGPDLPNQAV
CCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEE
LLDLANRRFYFFWIDIWSHEFYFVAGLLIMAGLGLFLFTSALGRVWCGYACPQTVWTDLF
EEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ILVERWIEGDRNARLRLHRQEKMDARKLRLRLTKWTVWLFIAVATGGAWVFYFADAPTLL
HHHHHHHCCCCCCEEEEEHHHHCCHHHHHHHHHHHEEEEEEEEECCCEEEEEECCCCEEE
VDLFTGQAAAVAYITVAILTATTFVFGGFAREQICIYACPWPRIQGAMMDEDTLTVAYRP
EEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEECCCEEEEEEEC
WRGEPRKHSEEVKAGEPMGDCIDCMACVNVCPVGIDIRDGQQMECITCALCIDACDDVMA
CCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHH
KIGKPRGLIDYLALSDEKLERAGNPPRPVWKHIFRPRTLIYTALWGGVGVALLVALFIRA
HHCCCCCHHHHHHCCHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
DIEVTVAPVRNPTFVTMSDGSIRNTYDIRLRNKNNEERLFRIAVQGDPAVRIQLEGTPYG
CCEEEEEECCCCEEEEECCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCCC
SVSVGADASHLQRVYVIAPPNSAPAEGDHTDLRFWIEDLTNGDRAYKDSNFTGKGTNQ
CEECCCCHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDQTTPPSLYAAREPIFPRRVSGPFRNFKWIVLIVTLGIYYVVPWIRWDRGPDLPNQAV
CCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEE
LLDLANRRFYFFWIDIWSHEFYFVAGLLIMAGLGLFLFTSALGRVWCGYACPQTVWTDLF
EEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
ILVERWIEGDRNARLRLHRQEKMDARKLRLRLTKWTVWLFIAVATGGAWVFYFADAPTLL
HHHHHHHCCCCCCEEEEEHHHHCCHHHHHHHHHHHEEEEEEEEECCCEEEEEECCCCEEE
VDLFTGQAAAVAYITVAILTATTFVFGGFAREQICIYACPWPRIQGAMMDEDTLTVAYRP
EEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEECCCEEEEEEEC
WRGEPRKHSEEVKAGEPMGDCIDCMACVNVCPVGIDIRDGQQMECITCALCIDACDDVMA
CCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHH
KIGKPRGLIDYLALSDEKLERAGNPPRPVWKHIFRPRTLIYTALWGGVGVALLVALFIRA
HHCCCCCHHHHHHCCHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC
DIEVTVAPVRNPTFVTMSDGSIRNTYDIRLRNKNNEERLFRIAVQGDPAVRIQLEGTPYG
CCEEEEEECCCCEEEEECCCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCCC
SVSVGADASHLQRVYVIAPPNSAPAEGDHTDLRFWIEDLTNGDRAYKDSNFTGKGTNQ
CEECCCCHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9068641; 7592416 [H]